Suncus etruscus (white-toothed pygmy shrew): 126033440
Help
Entry
126033440 CDS
T09902
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04382
Cornified envelope formation
setr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
126033440 (COL17A1)
09158 Development and regeneration
04382 Cornified envelope formation
126033440 (COL17A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
126033440
NCBI-ProteinID:
XP_049646379
LinkDB
All DBs
Position
17:complement(47945741..47990207)
Genome browser
AA seq
1434 aa
AA seq
DB search
MDVNRKNKREGTEVTERLITETVTTRLTSLPPKCSTSNGYAKTGSLGSGSRTEKQSLIHG
SSSYITGSGSTRGNASTSSYRRAHSPASTLPNSPGSTFDRKTHVTRHGTYEGSSSGNSSP
EYPRKEFASSATRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASVSPTRNS
SNTLPIPKKGTVETKTVTASSQSVAGTYDTTILDANLPAHMWSSTLPAGSSMGTYHNNMT
TQSSSLLHTNAYSSGSVFGLPNNMASCSPTLHPGISTCSSVFGMQNNLVPNSATLTHGST
STSTAYGVKKNMPQSPAVVSTGTSTSTACSTTVQNDDLLHKDCKFLILEKDNVPAKKEME
LLIMSKDSGKVFTASPASVAATSFSDDTLKKEKQAAYTADTQLIAESNGGVKTSSSKTTS
SDTYGYNQGSSYKQGSGGGVGSGGGIGGAGGGSKGDAWGAAPAWCPCGSCCSWWKWLLGL
LLTWLLLLGLLFGLIALAEEVRKLKARVDELEKLRSSMSYLEEKMERSNKDQLQGSYPGL
GTSLGTTGLEGSSQEALWLFVRNKLMTEQENGNLRGNPGPKGDMGSQGPKGDRGFPGTPG
TPGPMGHPGLEGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEPGPAGFGEKGDRGVAGN
PGVPGLPGPPGFLGPKGSSGPPGPQGPPGSAGPQGLRGEVGLPGVKGDKGPIGPSGPKGD
HGEKGPRGLTGEPGLRGLPGAVGEPGAKGAMGSPGPEGPQGPRGEQGLLGMAGTRGAPGP
SGEPGKPGLTGPQGPQGLPGSPGRPGTKGDPGTPGRIVTSEGSSAITVPGPPGPPGSMGP
PGPPGAPGPVGPAGLPGQQDGIDLRGPPGPPGPRGPPGPAIPGPPGPRGPAGEGLPGPPG
RPGSSLSSSETFFSGPPGPPGPPGPKGDQGEKGASRRMGEQGPPGFSSSGSGSLGFNLQG
PPGPPGPQGPRGDKGDPGVPGAPGIPGGLSHGGSSSSLYMQGPPGPPGPPGPPGSISSSS
LEIQRYISDYMQSDSIRSYLSGVQGPPGPPGPPGPVTSITGETFDYSQLASRVVSYLQSS
GYNIGSSSSSSFSSTSSISSDDILAALRQDNVRQYLRQLLSSSGASGDWFLQSLDYAELS
RHILSYMVHVYLQTSWLPGSAWSSVEDLSSFLRTAGVSSIPGPPGPPGPPGPRGPPGVSG
ALTSYAAENSDSFRSELISYLTSPDVRSFIIGPPGPPGPQGPPGDSRLESMEGSYSRSSR
SSSHSSMGSRESSYSSSMGIGGSSGVLGDGGAFGAMYGGDGGAFGAAYRGGLDYNELAVR
VSESLQRQGLLQGMAYTVQGPPGQPGPQGPPGISKVFSAYSNVTSDLMDFFRTHGAIPGP
PGQKGEMGIRGERGPAGQPGRPGPPGPRGYKGEKGDRGDQVYAGRRRRSVATKP
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggacgtaaacaggaaaaacaaacgagaaggcactgaagtcactgaaagacttatcaca
gaaacagtaactacaagactaacatccttaccaccaaaatgctccaccagcaatggctat
gctaagacgggctctctgggtagtggaagccgaacggagaagcaaagtctgattcatgga
agcagcagctacataaccggaagtggcagtacccggggcaatgcctccacctccagttac
aggagagcccattcacctgcctccactctgcccaattcgcccgggtcaacctttgacagg
aaaacacatgtcactcgccatggaacctatgaagggagctccagtggcaactcctcccct
gagtacccacgaaaggaatttgcatcttcagcaaccagaggccgaagccaaacccgagag
agcgagatccgggttcggctgcagagtgcgtccccctctacccgatggacagaactggat
gatgttaagcgattgctcaaggggagccggtcagctagtgtgagtcccactcgcaattct
tccaacaccctccccatccccaagaaaggcacagtggagaccaaaacggtgacagccagc
tcccagtcagtggctggcacctatgacaccaccatcctggatgccaaccttcccgcccac
atgtggtcctctaccttgccagcgggctcatccatggggacctaccacaacaatatgaca
acccagagctcgtccctcctgcacaccaatgcctactcttcgggatctgtgtttgggctt
cccaacaacatggcatcctgctccccaactctgcaccctggaatcagcacctgttcctca
gtgtttggcatgcagaataatctggtccccaattctgcaacactgacccatggttcaacc
agcacttccacagcatatggtgtaaagaagaacatgccccagagtcctgcagtggtgagc
accggcacatccacctccactgcctgcagcaccactgtgcagaatgacgacctcctgcac
aaggactgcaagttcctgatcctggagaaggacaacgtgcctgccaaaaaggagatggag
ttgctgatcatgtccaaggacagtgggaaggtgttcacagcctcccctgccagtgtggct
gcaacttctttttcagatgacaccctaaaaaaagaaaagcaagctgcctacacggctgac
acccaactcatagcagaatccaatggaggcgtgaagacttcgtcctccaagaccacctcg
tcagatacctacggctacaatcaaggcagcagctataagcagggcagcggcggcggtgta
ggtagcggcggcggcattggcggcgctggaggcggcagcaagggggacgcgtggggcgcg
gcgcccgcgtggtgcccctgcggctcctgctgcagctggtggaagtggctgctggggttg
ctgctcacctggttgctgctactggggctgctcttcggcctcatcgctctggctgaggag
gtacggaagctgaaagcgcgcgtggacgagctggagaagctgcggagcagcatgtcctac
ttagaggagaagatggagaggagcaacaaggaccagctgcagggatcgtacccagggttg
gggaccagcctggggaccaccgggctggaaggcagcagccaagaggcgctctggctcttc
gtgaggaataagctgatgacggaacaagaaaacggcaatctccgaggaaaccctggcccc
aaaggtgacatgggaagtcaaggtcccaaaggagatcgagggttcccagggaccccaggt
acccctggacctatgggtcacccaggcctagaaggacccaagggacaaaaaggcagtgtg
ggagatcctggcatggaaggacccatgggccagagagggcgagaagggcctatgggccca
cggggggagcctggccctgctgggtttggagagaaaggggacagaggggttgctggcaac
ccaggggttccaggtctaccaggccccccaggttttctgggtcccaaaggttccagtggt
cctcctggcccccagggccccccaggctctgcaggaccccaagggctccgaggtgaagtg
gggctccctggtgtcaaaggtgacaaagggcctatagggccatctggacccaaaggtgac
catggagagaaaggaccccgcggcctcacaggcgagcctggtttaagaggtttacccgga
gctgtgggtgagcctggagccaaaggagcaatgggatctcctggccctgaaggaccccaa
ggcccaagaggcgaacaaggccttttggggatggctggaacacggggcgcaccaggacct
tctggagagccaggaaagccaggtcttacagggccccaaggaccacagggactgcctggc
tcccctggacgccccgggaccaaaggtgacccaggaacccctggcaggattgtgacttca
gaggggtcttcggctatcaccgtcccaggacctccaggacctcctggatccatgggacct
ccaggccctccgggtgccccaggccctgtcggccctgctggtcttccaggacagcaagat
ggtattgacttacggggtcccccaggcccaccagggccacgtggaccaccaggacctgcc
attccaggcccaccaggacctcgaggaccagcaggtgaaggcttgccaggcccaccaggc
cgaccaggatcttccctgagcagctcagagaccttcttctcgggccctccaggtccacct
ggtccaccaggccccaagggagaccaaggtgagaaaggagcctcaagaaggatgggagag
caaggccccccagggttctcatcctcaggttctgggtctctcggattcaacctacaaggc
ccaccaggcccacctggcccgcagggacccagaggagacaaaggcgatcctggagtccca
ggagctcctggcattcctggtggtctctctcatgggggatcatccagctccttgtacatg
cagggcccaccaggcccccctgggcctcctgggcctcccggctctatcagcagctccagc
ctggagatccagcgctacatctcagattacatgcagagtgacagcattaggtcttacctc
tctggagttcagggccctccaggacccccaggtcccccagggcctgtgacctccatcaca
ggggagacgttcgactactcacagctggccagccgggtcgtgagctacttgcagtcctca
ggctacaacatcggctcctcttcctcctcctctttctcatctacatcctccatctcctca
gatgacatcctggctgcactgcggcaggataatgtgcggcagtatctgcgccagctcctg
agctcctcgggagccagtggcgactggttcctccagtccctggactacgcggagctgagc
agacacatcctcagctacatggtacatgtatacctgcagacttcctggctcccaggcagt
gcttggtccagtgtggaagatctctcatctttcctgcgtacggctggcgtgtcatctatc
ccaggccccccgggtccaccaggtccccctgggccccgtgggccaccaggtgtttcagga
gccctgacctcatacgcagctgagaacagcgacagcttccgcagcgagcttatcagctac
ttgaccagtccagatgtgcgcagcttcatcataggccccccaggccccccagggccccag
ggtcctcctggagacagccgcctggagtccatggagggctcctacagccggagcagccgg
tcatcctcacacagctccatgggtagcagggaatcgtcctatagcagctccatgggcatc
ggcgggtccagcggcgtcctgggtgatggtggagcctttggtgccatgtatgggggtgac
ggtggagcattcggggcagcttatagaggaggcctggactacaatgagctggcggtgcga
gtgtctgagagtttgcagcgtcagggcctcctgcagggaatggcatacactgtccagggc
ccaccaggccaacctggaccccagggacctcctggcatcagcaaggtcttctccgcctat
agcaacgtgacgtcggatctcatggactttttccgaactcacggagccattccaggaccc
cctggacagaagggagagatgggcatccgaggtgaaagaggccctgctgggcagcctggc
cggcctggcccaccgggccctcgaggatacaagggagagaaaggggacagaggtgaccaa
gtctatgctgggagaagacggagaagtgtcgccaccaaaccatga
DBGET
integrated database retrieval system
