Suncus etruscus (white-toothed pygmy shrew): 126033542
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Entry
126033542 CDS
T09902
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
126033542 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
126033542 (COL13A1)
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126033542 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
126033542
NCBI-ProteinID:
XP_049646466
LinkDB
All DBs
Position
17:complement(514437..641123)
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AA seq
713 aa
AA seq
DB search
MVVAERTGQAVAAAAAGGARVPGEMGAPGPEPEPVAKAKAQRCARWLSPGSCGLWALALC
SLALSLLAHLRTAELQARVLRLEAEREEPRVETAILGRVDQLLEEKWKLHSRKRREAPKP
SLVSCQCPPAPPGPPGKPGLPGDKGAIGMPGRVGLKGQPGEKGAPGDSGMSIIGPRGPPG
QPGTRGFPGFPGPIGLDGRPGYSGPKGEMGLAGPRGLPGPQGQKGEKGQCGEHPHREPPT
SLLAALRANQIITMKLLPLLNSVRLAPPPVIKRRTFQGEQGQTGLQGPPGPPGPPGPSGL
LGPPGLPGLMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGTKGAPGITVVGMK
GEPGTPGAKGEKGDTGNAIGGGRGEPGPPGPKGEPGAAGLLGPAGPPGPKGEPGRSEMVG
YNGNISEALQEIRTLALMGPPGLPGQTGPPGAPGIPGQKGEIGLPGPPGLDGEKGPRGRP
GDPGPPGPQGPPGKIGPAGTKGEDGQVGSPGEKGPKGEPGQAGWPGLDGPTGEKGEPGSP
GRPGAAGQPGPIGLPGFTGEKGDPGEKGEPGLELPGPPGPEGPPGPPGLQGIPGPKGEAG
LDGAKGEQGIQGEKGDRGPLGLPGIPGPIGIPGPAGPKGERGNKGDSGLTGPKGATGLPG
LHGLPGVKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPIQGCWNK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcgcagagcgcactggccaagcggtggccgcggcggcggctggtggtgcccgc
gtgcccggggagatgggcgcgcccgggccggagccggagccggtggccaaggcgaaggcg
cagcgttgcgcgcggtggctgagccctggctcctgcgggctgtgggcgctggccctgtgt
tccctggcgctcagcctcctcgctcacctccggacggccgagctgcaggcccgggtactg
cgcctggaagcggagcgcgaggagccgcgcgtggagacggctattttgggacgagtcgac
cagctgctggaggagaaatggaagctccactcacggaagcgccgggaggccccgaagcca
tcgttggtgtcatgtcagtgcccgccagctcccccaggccctcctggaaagcccggcctc
ccgggggacaaaggcgccattgggatgcctggacgtgtgggcctaaagggtcaaccaggc
gagaagggggccccaggagactccgggatgtccatcatcggcccccgaggcccccctggc
cagccgggcacccgaggtttccctggatttccgggccccattggactggatggcaggccg
ggctactccggacctaaaggagaaatgggcctggcgggtcctcgaggactacccgggcct
cagggacagaaaggagaaaagggccagtgtggcgagcacccgcatcgggaacccccgacc
agtttgctggcagctctgcgtgccaaccagataataaccatgaagctgctgcctctcctc
aactcagtgcgcctggctccgccgccggtcattaagaggcggaccttccagggagaacaa
ggccagacgggcctccaaggacctccaggcccaccggggccccctggaccaagtggcctt
ctaggacccccagggctgccaggcctcatgggaccacctggcctgcctggacctcctgga
ccaaagggagacccagggatccaggggtaccatggccggaagggagaaaggggcatgcca
ggaatgccgggcaagcacggcaccaagggagcgccggggatcaccgtggtcgggatgaag
ggcgagcctgggaccccaggagccaagggagagaaaggtgacacgggcaacgccattgga
ggaggcagaggggagcccggccccccagggccaaagggggagcccggagcagctggcttg
ctgggacctgccggccccccgggccccaagggggagccaggcagaagcgagatggtgggc
tacaacggcaacatcagcgaggcgctccaggaaatccgcaccctggccctcatggggcct
cctggtcttcccgggcaaacaggcccaccgggtgctccagggatcccaggccagaagggg
gagatcgggctgccaggccccccaggacttgacggggaaaaggggcctcgaggccgacca
ggagacccaggccctcccggtccccaaggcccccctggaaagattgggcctgcaggaacc
aagggagaagatggacaagtggggagcccaggagaaaaggggcccaagggggagccaggc
caggcaggctggccgggtctagacggccccacgggggagaaaggagagccgggcagtcct
gggagacctggggccgcaggacagcccggccccatcgggctgccagggttcacgggagag
aaaggagaccctggagagaagggggagccaggattggagcttcctgggccacctgggcca
gaaggtccccccggacctccggggctccagggtattcctggaccaaagggggaagcggga
ctggatggagccaaaggagagcaaggcattcagggagaaaagggagaccgaggacctctg
gggctcccaggtattccgggaccaattggcattccaggcccagcaggaccaaagggtgag
aggggcaataaaggtgactccgggctgacaggaccaaagggagcaactggacttccaggt
ttacacggactacccggggtcaaaggaaaccggggggagagggggaagaaaggctcccgg
gggcctaaaggggataagggagaccaaggagcacctggattggacgccccctgcccgttg
ggcgaagatggcttacccatccagggctgctggaacaagtga
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