Suncus etruscus (white-toothed pygmy shrew): 126033699
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Entry
126033699 CDS
T09902
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03082
ATP-dependent chromatin remodeling
setr03250
Viral life cycle - HIV-1
setr04714
Thermogenesis
setr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
126033699 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
126033699 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
126033699 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
126033699 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
setr01009
]
126033699 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
126033699 (SMARCB1)
03036 Chromosome and associated proteins [BR:
setr03036
]
126033699 (SMARCB1)
Protein phosphatases and associated proteins [BR:
setr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
126033699 (SMARCB1)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
126033699 (SMARCB1)
SWI/SNF complex
126033699 (SMARCB1)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
126033699 (SMARCB1)
PBAF complex
126033699 (SMARCB1)
SWI/SNF complex
126033699 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
126033699
NCBI-ProteinID:
XP_049646666
LinkDB
All DBs
Position
17:22851684..22884156
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcccgtcaagttccagttggag
gacgacggcgagttctacatgatcggctctgaggtggggaactacctccgtatgttccga
ggttctctgtacaagaggtacccctcactctggaggcggctagccactgtggaagagagg
aagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcacgga
tacaccaccctggccaccagtgtgaccctactgaaagcctcagaggtggaagagattcta
gatggcaacgatgagaagtataaggctgtgtccatcagcacggagccccccacctacctc
agggaacagaaagcaaagaggaacagccagtgggtacccaccctgcccaacagctcccac
catctagacgctgtgccatgttccacaaccattaacaggaaccgcatgggccgggacaaa
aagaggactttccctctctgctttgatgatcatgacccagctgtgatccatgagaatgcg
tcccagcctgaggtgttggtccccatccgcctggatatggagatcgatgggcagaagcta
cgggatgcctttacctggaatatgaatgaaaaactgatgaccccggagatgttttcagaa
atcctctgtgatgacctggacttgaatccgctgacctttgtgccagccattgcttctgcc
atcagacaacagatcgagtcctatcctacagatagcatcctagaagaccagtcagatcag
cgcgtcatcatcaagctcaacatccatgtgggcaacatctccctggtggaccagtttgag
tgggacatgtccgagaaggagaactctccggagaagtttgccctcaagttgtgctcggag
ctagggctgggcggggagtttgtcaccactatcgcatacagcatccggggacagctgagc
tggcatcagaagacctatgccttcagcgagaatcccctgcccacggtggagattgccatc
cggaacactggtgatgctgaccagtggtgccctctgctggagaccctgacggatgctgaa
atggagaagaagattcgggaccaggacagaaacacaaggcggatgaggcgtctggccaac
actgccccagcctggtaa
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