Salmonella enterica subsp. enterica serovar Typhimurium U288: STU288_02415
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Entry
STU288_02415 CDS
T02639
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
setu
Salmonella enterica subsp. enterica serovar Typhimurium U288
Pathway
setu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
setu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STU288_02415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
setu03400
]
STU288_02415
Enzymes [BR:
setu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STU288_02415
DNA repair and recombination proteins [BR:
setu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
STU288_02415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGK08097
LinkDB
All DBs
Position
complement(514168..517614)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL
ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPD
LAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQD
AGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaacaacgttacacgctgccgacaaaagcgggcgatcagcgccagttgggc
gaacttaccggtgccgcctgcgctacgctggtggcggagatagccgaacgccatgccggt
ccggtggtactcatagcgcctgacatgcaaaatgctctgcgattgcatgatgaaatccgc
cagtttaccgatcagatggtgatgaacctggcggactgggaaacgctaccgtatgacagc
ttctccccgcatcaggaaattatctcttcgcgcctgtccacgctctaccagttgccgtcg
atgcagcgcggcgtcttgattgtaccggtaaacaccctgatgcagcgcgtttgtccgcat
agctatctgcatggtcatgcgctggtgatgaaaaaaggccagcggctgtcccgcgacgct
ctgcgcgcgcagcttgacagcgccggttatcggcatgtcgatcaggtgatggagcatggc
gaatacgcgacgcgcggcgcgctgttggatctctttccgatgggcagcgaacagccttat
cgcctcgacttttttgatgatgaaatcgacagcctgcgtctgtttgacgcggatacccag
cgtacgctggaggaggtcgaggccatcaatttgttgcccgcgcacgaatttcctaccgac
aaagccgctattgagcttttccgtagccagtggcgcgatacctttgaggtaaaacgcgac
gccgagcacatctatcagcaggtcagcaaaggcactctgcccgccgggatcgaatactgg
cagccgctctttttcagcgaaccgttaccgccattatttagctatttccccgccaatact
ctggtggtgaataccggctcgctggaaaccagcgccgaacgctttcaggccgatacgctg
gcgcgttttgaaaatcgtggcgtcgatcctatgcgcccgcttttgccgccggaagccctc
tggctacgggtggatgagctcttttccgagcttaaacgctggcctcgcctccagcttaaa
accgaccatctgccggaaaaagccgccaataccaatctcggtttccagaaattaccggat
ttggctatccaggcgcagcagaaagcgccgctggacgcgctgcgtaagttcctcgaatct
ttcagcggtccggtgattttttctgtggaaagcgaaggacgccgcgaagctctgggagag
ctcctggctcgcataaaaatcgcgccgaagcggatattacgcctggacgaggcgcaggat
gcgggacgctatctgatgattggcgccgcagaacatggctttatcgacacccaacgcaat
ctggcgctgatttgtgaaagcgatcttttgggtgagcgggtggcgcgtcgccgcctggat
tcccgccgcacgatcaacccggatacgttgattcgtaacctggcggagctccacgtcggt
cagccggtagtgcatctggagcacggcgtcggacgctatgccggcatgaccactctggag
gctggcggcatcaagggtgagtatctgatgctcacctacgccaatgacgccaaactgtat
gtgccggtctcctcattgcatctgattagccgctatgccggcggcgcggaagaaagtgcg
cctctgcataaactgggcggcgacgcctggtcgcgcgcccggcagaaagcggcggaaaaa
gtgcgcgatgtcgcagcggaactgttggatatttatgcgcaacgggcggcaaaagagggt
tttgcctttaagcatgatcgtgagcagtatcagttattctgcgacagcttcccgtttgaa
acgacgcccgatcaggcacaggcgattaacgccgtattgagcgatatgtgccaaccgctg
gcgatggacaggctggtgtgcggcgacgtcggcttcggcaaaaccgaagtggcgatgcgc
gccgcgttcctggcagtggaaaaccataaacaagtagcggtactggtgccgactacgctg
ctggcgcagcaacactatgacaacttccgcgaccgtttcgccaactggccggtacgcatt
gagatgctgtcccgctttcgcagcgccaaagagcagacacaaatcctggcggaagccgcc
gagggtaagatcgatattctgatcggtacgcataaactgctacaaagcgatgtgaagctg
cgcgacctcggcctgctgattgtcgatgaagagcatcgtttcggcgtgcgccacaaagag
cgaattaaggcgatgcgcgccgatgtcgatattctgacgctcacggcgacgccgatcccg
cggacgctgaatatggcgatgagcggtatgcgcgatctctccattatcgccaccccccct
gcccgtcgtctggcggtaaaaacctttgtccgcgagtatgatagcctggtggtaagggaa
gcgattctgcgtgaaatcctgcgcggcggtcaggtttactatttgtacaatgacgtcgaa
aatattcagaaagccgcagagcggctggcggaactggtgccggaagcgcgaatcgctata
ggccacgggcagatgcgcgaacgtgagctggaacgggtcatgaacgatttccaccatcaa
cgttttaacgtgctggtgtgtactaccattatcgaaacggggatcgacattcccaccgct
aacacgatcatcattgaacgcgcggatcatttcggcctcgcgcagttgcaccagctgcgt
ggccgcgttgggcgctcgcaccaccaggcctacgcctggctgttgacgccacatcctaag
gccatgaccaccgatgcgcaaaaacggctggaggcgattgcgtcgctggaggatttaggc
gccgggtttgcgctggcgacccacgatctggagatccgcggcgcgggcgaactgcttggc
gaagagcaaagcggctcaatggaaaccatcggcttctcactctacatggaattgctggaa
aacgccgttgatgcgctgaaagcaggccgcgaaccctcgctggaagatctcaccagtcag
caaacggaagtcgagctgcgaatgccgtcgttactgccggatgattttattccggatgtt
aatacccggctgtcattctataaacgcattgccagcgcgaagaacgaaaacgagctggag
gagatcaaagtggaattgatcgaccgcttcggcctgctgcccgatccggcgcgtaatctg
ctggatatcgcccgcctgcgccaacaggcgcaaaagctcggcatccgaaaactggagggt
aacgagaaaggcggaacgattgagttcgccgagaaaaaccacgttgaccccgcctggctt
atcgggttgctgcaaaaacagccgcagcatttccgtctggatggcccgacgcgcctcaag
tttattcaggatttaagcgaacgtaaaacgcgtatagactgggtacgccagtttatgcag
caactggaagaaaacgctattgcataa
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