Salmonella enterica subsp. enterica serovar Typhimurium U288: STU288_04555
Help
Entry
STU288_04555 CDS
T02639
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
setu
Salmonella enterica subsp. enterica serovar Typhimurium U288
Brite
KEGG Orthology (KO) [BR:
setu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setu03019
]
STU288_04555
Enzymes [BR:
setu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
STU288_04555
Messenger RNA biogenesis [BR:
setu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
STU288_04555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
PhoH
AAA_16
ResIII
SLFN-g3_helicase
DUF6145
Motif
Other DBs
NCBI-ProteinID:
AGK08521
LinkDB
All DBs
Position
complement(946610..950455)
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEIEQAAAQVALREAARPSITYPQNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGEREIRDTADALNKLNLRHTE
VLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY
REIHVALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRL
WGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDDTLFEFY
DQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRRELVIALIKSLPKPVRRNFV
PAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDWHWDQVPEHLKITFRVVNDK
NKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIWSFGELPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTALHEKVRAELNDTVVDIAKQVERI
LTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDDDVKEIRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMDQITA
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgacaaacagcgctttgcgcgccgcctgcatggcgtaaagaaagtaaaaaat
cctgatgcgcaacaggccattttccagacgatggcgaaagaaattgaacaggctgcggcg
caggtcgccctccgcgaagcggcgcgcccctcaatcacttatccgcaaaatttgcctgtt
agccagaagaaacaggacattctggaagcgatccgcgatcatcaggtggtgatcgtggca
ggggaaaccggttccggtaaaaccacccagttgccgaaaatttgtatggaactgggacgc
ggaattaaaggacttattggacatactcaaccgcgtcgtctggcggcgcgcaccgtcgct
aaccgcattgccgaagagttgcaaacggagcctggcggctgcatcggctataaagttcgt
ttcagcgatcatgtcagtagcaacaccatggtcaaactgatgacggacggtatcctgctg
gcggaaatccagcaggacaggctattgatgcagtatgacaccctcattattgatgaagcg
catgaacgcagcctgaatattgacttcttgctcggctatctgaaagaacttctgccgcgt
cgccccgatctgaaagtgattattacctctgcgaccatcgacccggaacgcttctcgcgc
cactttaataacgcgccgattatcgaagtctctggccgaacgtatcccgtagaagttcgt
tatcgccccattgtggaagaggctgacgacactgaacgcgatcagctacaggcaattttc
gatgctgtcgatgaactggggcgtgaaagtcccggcgatattctgatttttatgagcgga
gagcgggaaatccgcgataccgccgacgccctgaacaagctgaacttacggcataccgaa
gtgttgccgctgtatgcacgcttgtcgaacagcgaacagaaccgcgttttccagtcgcac
agcggacgccgtatcgtgctggcgactaacgtggcggaaacctcgctgacggtgccgggt
atcaagtatgtgatcgatcctggcactgcgcgcatcagccgctacagctaccgcactaaa
gtgcagcgcctgccgattgaaccgatctcacaggcttccgccaaccagcgtaaagggcgt
tgcgggcgcgtatcggaagggatttgcattcgtctgtattcggaagatgactttttgtca
cgtccggaatttaccgacccggaaattctacgtaccaacctggcgtcggttattttgcag
atgaccgccctggggctgggtgacattgccgccttcccgtttgtcgaagcgccggataag
cgcaatattcaggatggcgtgcgtttgttggaagagctgggggcgattaccgccgacgaa
cagcaaacggcatataagctgacgccactgggccgacaattatcccagttgccggtcgac
ccgcgcctggcgcgtatggttctggaagcgcaaaaacatggctgtgtgcgcgaagcgatg
atcattacttccgcactctctattcaggatccgcgcgagcgcccagtggataagcagcag
gcttccgatgagaaacaccggcgtttccatgataaggaatccgattttctggcgtttgtt
aacctgtggaattacctcggcgagcaacaaaaggccctgtcgtcgaatcaattccgccgt
ctgtgtcgcaccgactatctgaactatttacgcgtgcgtgagtggcaggatatctatacc
caactgcgtcaggtggtaaaagaactggggattccggtaaacagcgaacccgcagagtac
cgggaaattcacgttgcgttgttaacgggactgttgtcgcatatcgggatgaaagatgcc
gataaacaagagtacaccggcgcgcgtaacgcccgattctctattttccccggttccggt
ttattcaaaaaaccgccgaaatggacaatggtcgcagaactggtggagaccagccgcctg
tgggggcgcatcgctgcccgcattgagccagaatgggtggaaccggtagcccagcacctg
attaaacgttcatatagcgaaccgcactgggagcgggcgcaaggcgcggtgatggcgacg
gaaaaggttactgtctacggtctgccgattgtcgccgcgcgcaaagtgaattacagccag
attgacccggcgttgtgtcgcgagttgtttatccgccatgcgctggtggagggggactgg
caaacccgtcacgccttcttccgtgagaatctaaaattgcgtgcggaagtcgaggaactt
gagcacaaatctcgccgccgcgatatcctggtggatgacgataccctgtttgagttttat
gaccagcgtattagccatgacgttatttccgcccgccactttgatagttggtggaaaaaa
atcagccgcgagacgccggatctgctcaactttgaaaaaagtatgctgattaaagaaggc
gcggaaaaaatcagcaaactggattacccgaacttctggcaccagggcaatcttaagctg
cgtttgagctatcagtttgaaccgggcgcggatgctgacggcgtgaccgtccatattccg
ttgccgctacttaaccaggttgacgagagcggttttgaatggcagatcccagggctgcgc
cgtgaattagttattgcgctgattaaatcgttgccaaaaccggtacgtcgcaactttgtt
ccggcgccaaactatgctgaagcgtttttaggtcgcgtaacgccgctggagctgccgctg
ctggacgctctggagcgtgaactgcgccggatgaccggcgtcacggtcgatcgggaagac
tggcattgggatcaggtgcccgagcatctgaaaatcacgtttcgcgtggtgaatgacaaa
aacaagaaactgcaggaagggcgttcgctcgccgagcttaaaaatgcgctgaaaggcaaa
gtgcaggagacgctctcggcggtggcggatgacggcatcgagcagagcgggctgcatatc
tggagtttcggcgagctgccggaaagctacgaacagaaacgcggtaattataaagtgaag
gcgtggccggcgttagtggatgagcgtgacagcgtcgctatcaaattgtttgataatccg
ctggaacaacaacaggcgatgtggtgcggtttacgccgtctgttgttgctcaatattcct
tcaccgattaagtatctgcatgagaaattgccgaataaagccaagctggggctgtacttt
aacccgtacggcaaagtactggagttgattgatgactgtatcgcctgcggggtagataag
ctgatagatgccaacggcggaccggtgtggagcgaagcaggtttcaccgcgctgcacgaa
aaggtacgcgccgagctgaatgatactgtggtggatatcgcgaagcaggtcgagcggatc
ctgacgaccgtattcaatatcaataagcgtctgaaagggcgggtggatatgagcatggcg
ttggggctttccgatatcaaggcgcagatgagcggtctggtataccgtggttttgtgact
ggcaacggctttaaacgtctcggcgatacgctgcgttatctgcaggcaattgaaaagcgg
ctggagaaactggctgtcgatccgcaccgcgatcgggcgcaaatgctgaaagtcgaaagc
gtccagcaggcgtggcaacaatggataaataaattgcctccagcgcgtcgcgaagatgat
gatgttaaagagatccgttggatgattgaagaactgcgtgtcagttatttcgcccaacag
ctcggtacgccttatcctatttccgataagcgtattttacaggccatggatcagattacg
gcctaa
DBGET
integrated database retrieval system
