Salmonella enterica subsp. enterica serovar Typhimurium U288: STU288_17275
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Entry
STU288_17275 CDS
T02639
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
setu
Salmonella enterica subsp. enterica serovar Typhimurium U288
Pathway
setu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
setu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
STU288_17275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setu03021
]
STU288_17275
03400 DNA repair and recombination proteins [BR:
setu03400
]
STU288_17275
Enzymes [BR:
setu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
STU288_17275
Transcription machinery [BR:
setu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
STU288_17275
DNA repair and recombination proteins [BR:
setu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
STU288_17275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AGK11051
LinkDB
All DBs
Position
complement(3580932..3581921)
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtgagt
tcgacgcacgccaaggtgacccttgagcctttagagcgtggcttcggccatactctgggt
aacgcactgcgccgtattctgctctcatcgatgccgggttgcgcggtgaccgaggttgag
attgatggtgtactacatgagtacagcaccaaagaaggcgttcaggaagacatcctggaa
atcctgctcaacctgaaagggctggcggtgagagttcagggtaaagatgaagttattctt
accttgaataaatctggcattggccctgtgactgcagccgatatcacccatgatggggat
gtcgaaatcgtcaagccgcagcacgtgatctgccacctgaccgatgaaaacgcgtctatt
agtatgcgtatcaaagttcagcgcggtcgtggttatgtgccggcttctacccgaattcat
tcggaagaagatgagcgcccaatcggccgtctgctggtcgacgcctgctacagccctgta
gagcgtattgcctacaatgttgaagcagcgcgtgtagaacagcgtaccgacctggacaag
ctggtcatcgaaatggaaaccaacggcacaatcgatcctgaagaggcgattcgtcgtgcg
gcaaccatcctggctgaacaactggaagctttcgttgatttacgtgatgtacgtcaaccg
gaagtgaaagaagagaaaccagaattcgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgcctcaaggcagaagctatccactatatcggtgat
ctggtacagcgtaccgaggttgagcttcttaagacgcctaacttgggtaaaaaatctctt
accgagattaaagacgtgctggcttcccgtggactgtctctgggtatgcgcctggaaaac
tggccaccggcaagcatcgctgacgagtaa
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