Salmonella enterica subsp. enterica serovar Typhimurium U288: STU288_1p00350
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Entry
STU288_1p00350 CDS
T02639
Name
(GenBank) conjugal transfer nickase/helicase TraI
Organism
setu
Salmonella enterica subsp. enterica serovar Typhimurium U288
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TrwC
TraI_C
TraI_2B
AAA_30
TraI_hel_assoc_N
ssDNA_TraI_N
AAA_19
UvrD_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AGK12269
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All DBs
Position
pSTU288-1:complement(44588..49846)
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AA seq
1752 aa
AA seq
DB search
MMSIAQVRSAGSAAGYYSDRDNYYVLGSMEERWAGKGAEQLGLQGTVDKEVFTRVLEGRL
PDGADLSRQQDGGNKHRPGYDLTFSAPKSVSLMAMLAGDKRLTEAHNQAVDIAVRQVEAL
ASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVVNVTQHDGEWKTLSSDKV
GKTGFIENVYANQIAFGKIYRAVLKEKVEALGYETEVVGKHGMWEMPGVPVEAFSSRSQA
IREAVGEDASLKSRDVAALDTRKSKQHVDPEVKMAEWMQTLKDTGFDISAYRESADRRAE
IQAAQPVPSQEQPDIQQAVTQAIAGLSDRKVQFTYTDVLARTVGMLPPEAGVIEKARAGI
DEAISREQLIPLDREKGLFTSGIHVLDELSVRALSSDIMKQNRVTVHPEKSVPRTGSYSD
AVSVLAQDRPSLAIISGQGGAAGQRERVAELTMMAREQGREVQIIVADRRSQTNLKQDER
LSGELITGRRQLQEGMLFSPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRT
GTGSALMAMKEAGVNSYRWQGRQQTPATVISEPDRNVRYARLAGDFVAAVKAGEESVAQV
SGMREQAILAGMIRSELKTQGILGQQDTMMTALSPVWLDSRNRYLRDMYREGMVMEQWNP
EKRSHDRYVIDRVTAQSHSLTLRDAQGETQMVRISALDSSWSLFRPEKMPVADGERLMVT
GKIPGLRVSVGDRLQVSAVNDGVMTVTVPGRAEPASLPVGDSPFTALKLENGWVETPGHS
VSDSAKVFASVTQMAMDNATLNSLARSGRDVRLYSSLDETRTAEKLSRHPSFTVVSEQIK
ARAGEVSLETAISRQKAGLHTPAQQAIHLALPVVESKNLAFSQVDLLTEAKSFAAEGTGF
ADLGREIDAQIKRGDLLYVDVAKGYGTDLLISRASYDAEKSILHHILEGKEAVTPLMERV
PGELMETLTSGQRAATRMILETKDRFTVVQGYAGVGKTTQFRAVMSAVNLLPESERPRVV
GLGPTHRAVGEMRSAGVEAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMA
RAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELRDAVY
SLINRDVNKALSGLENVKPVQVPRLKGAWAPENSVTEFSRLQERELAKAAQEAEKKGEAF
PDVPVTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIQDALAKPGEQQVTVPVL
TTANIRDGELRRLSTWEAHPGALALVDNVYHRIAGISKEDGLITLEDKAGNTRLISPREA
AAEGVTLYNPETIRVGAGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGKQTRVVR
PGQDRAEQHIDLAYAITAHSAQGASETFAIALEGTEGGRKQMAGFESAYVALSRMKQHVQ
VYTDDRQGWVKAINSAEQKGTAHDVLEPKSEREMMNAERLFSTARELRDVAAGRAVLRNA
GLAQGDSRARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGAGLRGFTGEGRVK
GSEEAQFVALQGSRNGESLLAGSMQDGVRIARENPDSGVVVRIVGDGRPWNPVAITGGRV
WGDIPDSNVQPGAGNGEPVTAEILAQRQAEEAVRRETERRADEIVRKMAEDKSDLPEEKT
AQAVREIAGQEQDRMTPPEREPPLPESVLREPQRERETIREVARENRGRERLQQMEQEMV
RDLQKEKTPGGD
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtattgcgcaggtccggtcggcgggaagtgccgccggttattacagcgacagg
gataactactacgtgctgggcagcatggaagagcgctgggccggaaaaggcgcggagcag
ctggggttgcagggcaccgtcgataaggaggtgttcacccgggtactggaaggcagactg
cccgacggggctgatctgagccggcagcaggatggcggcaacaaacaccgccccggctat
gatctgaccttctctgcccccaaaagtgtttccctgatggccatgctggccggtgataaa
cgcctgactgaggcacacaaccaggcggtggatatcgctgtccgtcaggtggaggcgctg
gcctccaccagggtgatgacggacggacagtcagaaacggtgctcaccggtaatctggtg
atggcgctgttcaatcatgacaccagtcgtgaccaggagccgcagttgcatacccatgct
gtggtggtcaacgtcacgcagcatgacggggaatggaagaccctgagcagcgataaggtg
ggcaaaacgggatttatcgagaatgtctatgctaaccagatagccttcgggaagatttac
cgcgcggtgctgaaagagaaggttgaagcgctgggctatgaaacggaagtggtcggtaag
cacggtatgtgggagatgcccggtgtcccggtggaggccttttccagccgttcgcaggcc
atccgagaggcggtcggggaggatgcctcgctgaaatcccgggatgtggcggcgctggat
acgcgtaaatccaaacagcatgtcgatccggaagtgaaaatggctgagtggatgcagacc
ctgaaagataccgggtttgatatcagcgcataccgtgagtctgcggacaggcgggcggaa
atacaggcagcacagcctgttccgtcacaggagcagccggatattcagcaggcggtgacg
caggccattgccggattaagcgaccggaaggttcagtttacgtataccgacgtgctggcc
agaacggtcggcatgctgccgccggaagccggcgtgattgagaaagcccgggccgggatt
gatgaggccatcagccgcgagcagcttatccccctcgaccgggagaaaggactgttcacc
tccggtattcatgtgctcgatgagctgtctgtccgggcactcagcagcgatatcatgaag
cagaaccgggtgaccgtccatccggagaagagcgtgccccgcacgggaagttacagcgac
gcggtgagtgtcctggctcaggaccgcccgtcactggccattatcagtggtcagggcggt
gctgccggtcagcgggagcgggtggcggaactgacgatgatggcccgggagcaggggcgt
gaggtgcagattattgtcgctgaccgccgttcgcagacaaacctgaagcaggatgaacgt
ctgtccggtgagctgataaccgggcgtcgtcagttgcaggagggcatgttattttccccg
ggcagtaccgttattgtcgaccagggggaaaagctgtccctgaaggagactctgaccctg
ctggatggcgcggcgcgtcataacgtccaggtgctaattaccgacagcggtcagcgcacc
ggtaccggcagcgcgctgatggccatgaaggaggccggcgtgaacagttaccgctggcag
ggcaggcagcagaccccggcgaccgttatcagcgagccggaccggaatgtccgctatgcc
cggctggccggggattttgtggctgcggtgaaagccggggaagagagcgtggcacaggtc
agcggcatgcgtgaacaggccatactggcggggatgatacgcagtgagctgaagacgcag
gggatactcgggcagcaggacaccatgatgaccgccctgtcaccggtctggctggacagc
cggaaccgttacctgcgcgatatgtaccgtgaagggatggtgatggagcagtggaacccg
gagaaacggtcccatgaccggtatgtgattgaccgggtgaccgcacaaagtcacagtctg
accctgcgggatgcgcagggagagacgcagatggtgcggatttcagccctggacagcagt
tggtcactcttccgaccggagaagatgccggtggcagacggtgagcgtcttatggtgacg
ggaaaaattcccgggcttcgcgtctccgtcggcgaccggctgcaggtatctgcggtgaac
gatggcgtgatgacggtgacggtacccggcagggctgaaccggcttccctgccggtgggg
gattccccgttcacggcgctgaagctggaaaacggctgggtggaaacacccgggcattcc
gtcagtgacagtgcgaaagtttttgcttccgtcacacagatggcgatggacaacgccacc
ctgaacagtctggcccgcagcggccgggatgtccggctgtattcctcactggatgagacc
cgcactgctgaaaaactctcccgtcacccgtcttttacggtcgtttctgagcagataaag
gcgcgtgccggtgaggtatcgctggaaaccgccatcagccgccagaaagccgggcttcac
acgccggcacagcaggccattcaccttgcccttccggtggtggaaagtaaaaacctggca
ttcagtcaggtggacctgctgacggaggcgaagtcgtttgctgcagagggaaccggtttt
gctgacctgggacgggaaattgatgcgcagataaaacggggcgatttactgtatgtggat
gtggcaaaaggttatggcacagacctgctgatttcccgtgcgtcgtatgacgctgaaaag
agtattctgcatcatatccttgagggcaaggaggcggtcacgccactgatggagagggta
cccggcgaactcatggagactctgacatccggacagcgtgccgccacccgtatgatactc
gaaacgaaagaccgtttcaccgtggtacagggttatgccggggtgggcaagaccacccag
ttccgggcggtgatgtcagcggtgaacctgctgccggagagtgagcgtccccgcgtcgtg
gggctgggaccgacccacagggcggtcggggagatgcgcagtgccggcgtggaagcacag
acgctggcgtcctttctgcacgacacgcaactgcagcagcgcagcggtgaaacgccggat
ttcagcaacacgctgttcctccttgatgagagttcgatggtgggcaacaccgatatggcg
cgggcatacgccctgattgcggccggtggtggtcgtgccgtggcgagcggtgacacggac
cagctgcaggccatcgcacccggccagcctttccgcctgcagcagacgcgcagcgcggct
gatgtggccatcatgaaggagattgtacgccagacaccggaactgcgggacgccgtgtac
agcctgattaaccgggatgtgaataaggcactgtccgggcttgaaaacgtgaagccggtt
caggttccccgcctgaagggggcatgggcgccggaaaactcggtgacggagttcagccgt
ctgcaggagcgggaactggcgaaagccgcacaggaggcggagaaaaagggcgaagccttt
ccggatgtgcccgtgacgctgtatgaggccattgtccgcgactataccggcagaacgccg
gaagcccgggagcagacgctgattgtcacgcatctgaatgaggaccgtcgggtgctgaac
agcatgattcaggatgcgctggcgaaaccgggtgagcagcaggtcactgtccctgtactg
accaccgcgaatatccgtgacggggaactgcgccgtctgtccacctgggaggcgcatccg
ggggcgctggccctggtggataatgtgtatcaccggattgccggtatcagtaaggaggac
gggctgattaccctggaagataaggcgggtaacacccgccttatttccccccgggaagca
gcggcagagggcgtcacactatacaatccggaaactatccgggtgggggccggtgaccgg
atgcgtttcacgaagagtgacagggaacgcgggtatgtggccaacagcgtctggacggtg
acggcggtttccggtgacagcgtcacgctgtcagacgggaaacagacccgcgtggtgcgt
cccgggcaggacagggcagagcaacatattgacctggcgtatgccatcaccgcccacagt
gcgcagggggccagtgagacgtttgccattgcgctggagggaaccgaagggggccggaaa
cagatggccggttttgagtcggcgtatgtggcgctgtcgcgtatgaagcagcatgtgcag
gtgtacaccgacgaccgtcagggttgggttaaggccatcaacagtgcggagcaaaagggc
acggcccatgacgtgctggagcctaaatcagagcgtgagatgatgaacgcagagcgcctg
ttcagcaccgcccgggaactgcgggacgtggccgccggccgtgccgtgctgcgcaacgcc
ggactggcgcagggagacagccgggcgcgttttattgcaccggggcgcaagtatccgcag
ccgtatgtggcgctgccggcgtttgaccgtaacggtaaatccgccggtatctggctgaac
ccgctgacaacggatgacggtgccgggctgcggggattcaccggggaaggtcgggtgaaa
ggcagtgaagaggcgcagtttgtggccctgcagggcagtcgtaacggcgaaagcctgctg
gctggtagcatgcaggatggcgtccggattgcccgggagaaccccgacagcggcgtggtg
gtgcgaattgtcggtgacgggcgtccatggaatcccgtcgccattaccggcggcagggtg
tggggcgatattcctgacagtaacgtgcagcccggcgcggggaacggggagccggtcacg
gcagagattctggcacagcggcaggcagaagaggcagtccgccgtgaaacagaacgccgt
gcggatgagattgtccgtaaaatggctgaggacaaatctgacctgccggaggagaaaacc
gcgcaggcggtcagggagattgccggccaggagcaggacagaatgaccccgcctgaacgg
gaacccccgctgccggagagtgtgctgcgcgaaccacaaagggagcgggagaccatccgg
gaagtggcgcgggaaaaccggggccgggagcggctgcagcagatggagcaggagatggtg
cgtgacctgcagaaagagaaaacccctggcggggactga
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