Streptococcus equi subsp. equi 4047: SEQ_0007
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Entry
SEQ_0007 CDS
T00877
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
seu
Streptococcus equi subsp. equi 4047
Pathway
seu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
seu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SEQ_0007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seu03400
]
SEQ_0007
Enzymes [BR:
seu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SEQ_0007
DNA repair and recombination proteins [BR:
seu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SEQ_0007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
RecG_dom3_C
DUF3196
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAW91884
UniProt:
C0M9G5
LinkDB
All DBs
Position
5337..8831
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AA seq
1164 aa
AA seq
DB search
MDILELFNQNKSIQTWQCDVTSLKRQLVMGLSGSSKAAAIASAYLSFQGKLVVVTSTQND
MEKLAGDLSALLDEGSIFQFFADDTAAAEFIFSSMDKTISRIEALAFLSNPEARGILVIS
LAGLRILLPSPKTFQQGQIDLAVGVDTDLDNVVKKLVKIGYQRVAQVLSPGEFSRRGDIL
DVYEVTQDLPVRIEFFGDEIDGIRSFDIESQKSLQKKDSTSIKPASDMIFEPEDFDRASH
NLEKQLQLAKAEHKGYLEELLTVTKEGLKHKDIRKFQSLFYDNEWTILDYLPKGTPVFFD
DFQKLVDRNAKFDLELAHLLTDDLQQGKSLPFLHYFADNYRELRHYKPATFFSNFHKGLG
NIKFDKVYSLTQYAMQEFFNQFPLLIDEIKRYQKSGATVLLQVESHQAYERLAKSLEAYQ
CQLPLVSADAIVLHQAQIIIGHLAGGFYFADEKLVLITEHEIYHKRLKRRARRTNMSNAE
RLKDYNELSKGDYVVHSVHGIGRFLGIETINIQGVHRDYVTIQYQQSDRISLPVDQLESL
SKYVSADGKEPKINKLNDGRFQKAKQRVKKQVEDIADDLLKLYAERSQQKGFQFSPDDEL
QRAFEEDFAFVETDDQVRSIKEVKKDMESVRPMDRLLVGDVGFGKTEVAMRAAFKAIGDH
KQVAILVPTTVLAQQHYENFRERFENYPVEIAVLSRFRSKKEQSESLERLKKGQVDIIIG
THRLLSKDVIFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIREMDRGGQVFYVYNKVDTVDKKVAEL
QELVPEASIGFVHGQMSDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFDMYSQLLEQAIASKQGRALTRQKGNAEINLHIDAYLP
SDYIKDERQKIDIYKRIREIDSRAAYSDLQDEIMDRFGDYPDQVAYLLEIGLLKYYLDTA
FAELVEKRDHQVMVRFEVASLQYYLTQDYFEALSKTSLKARISEHQGKIEIIFDVRRQKD
HVILEELILFGETLGEIKSRKASS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggatattttagaattatttaatcaaaacaagtcaatccagacctggcaatgtgatgta
acaagcttaaaacggcaattagtcatgggcttgtcaggctcaagtaaagcagcagccatt
gcctcagcctatcttagctttcaagggaagctggtcgtggtgacatcaactcaaaatgac
atggaaaaattagctggtgatttgtcagccttgcttgatgagggctctatttttcaattt
tttgcagatgatactgctgcggctgagtttattttctcctctatggataaaacaatctcg
agaatagaggcactagcttttttatcaaatccagaagcaagaggaatattggtcattagc
ttagcaggactcagaatcctacttccaagtcctaagacttttcagcaggggcagattgac
ttagcagtaggagttgacactgatcttgacaacgttgtcaagaagcttgtcaaaattggt
tatcaaagggtggctcaggtccttagtcctggtgaatttagcagacgaggtgatatttta
gatgtttacgaggtaacacaggacttacctgttcgcatcgaattttttggtgatgagatt
gatggtattaggagctttgatatagaaagtcaaaaatctctccaaaagaaggatagcacc
agtatcaagcctgcaagtgatatgatttttgagccggaggattttgatagggctagtcat
aatcttgaaaagcagcttcaacttgctaaggcagaacataaaggctatctggaggagttg
ctcactgtaacaaaagaaggcctgaagcataaggacatccgtaaatttcaatcactgttt
tatgataatgaatggacgattctagattaccttcctaagggaacaccagtattttttgat
gatttccaaaagttagttgacagaaatgctaaatttgacttagagcttgctcatttgttg
acagatgatttacagcaaggaaagtcacttccatttctccattattttgctgacaattat
cgtgagctgcgacactataagcctgccaccttcttttcaaattttcacaagggacttggt
aatattaaatttgataaggtgtatagcttaacacagtatgccatgcaggaatttttcaat
caatttccactgctcattgatgagattaagcggtatcaaaaatctggagcaactgtcctt
ttacaggttgaatctcatcaagcttatgagcggttggcaaaatctcttgaggcttatcaa
tgtcaattgccccttgtttctgctgatgcaatagtattacatcaagcacaaatcattatt
ggtcacctagcaggtgggttttactttgctgatgaaaaattagttttaattactgagcat
gagatatatcataagaggctgaagcgtcgtgctcgtcgtactaatatgagtaatgctgaa
cgcttaaaggattacaatgaattgtctaagggtgattatgtggtccacagtgtgcatggg
attggtcgttttttaggcattgaaacgattaacatacaaggggtacatcgagattatgtc
accattcagtatcagcagtcagatcgaatttctttgcctgttgatcagcttgaaagctta
tcaaaatatgtatcagcagatggtaaagagccaaagattaataaactaaacgatggtcgt
tttcaaaaagcaaagcaaagggttaaaaagcaagttgaggatattgcagatgacctgttg
aagctttatgcagagcggagtcagcaaaaaggatttcagttttctccagatgatgagtta
caaagagcatttgaggaggattttgcctttgttgagactgatgatcaagttaggtccata
aaagaggttaaaaaagacatggagagtgtcagacctatggatcgtttactagttggtgat
gttggctttggtaagactgaggtggctatgagagctgcttttaaggctatcggtgaccat
aagcaggtagctatcttagtaccaacaaccgttttagcacagcagcattatgagaatttt
agggaaagatttgagaactatccggttgaaattgctgttttaagccgctttcgcagtaaa
aaagagcaatctgaaagtctagaaaggctaaaaaagggtcaggttgatattattattggg
actcataggttgctgtcaaaggatgtgattttttcagatttaggcttgattgtcattgat
gaagagcagcgttttggtgttaagcataaagaaaccctaaaggaattaaagaccaaggtt
gatgtccttacactgactgcaacgcctattcctcgtaccctgcatatgtctatgcttggt
attcgggatttatcagtgattgagacgcctcctacgaatcgctatcctgttcagacttat
gttttagaaaataatcctggcttgattagggaagctattattcgagaaatggatcgtggt
ggtcaagtcttttatgtttacaataaggttgacactgttgacaagaaggtggcagagctg
caagaattggttccagaggcttctattggttttgtccatggtcaaatgagtgacattcag
cttgagaataccttgatggattttatcaatggtgattatgatgttttagttgcaacaact
attattgagacaggggttgatatttctaatgtcaataccttatttattgaaaatgctgat
catatgggactatcaactttgtatcagcttcgaggtcgtgttggaaggagcaatcgtatt
gcctatgcttatctcatgtataagcctgataaggtactaacagaggtttccgaaaaaagg
ttagaagctattaagggctttacagagctgggatctggctttaaaattgctatgcgagat
ttatctattcggggagcaggaaatatattgggtgcttcacaaagtggttttattgactca
gttggttttgacatgtattctcagctgctggagcaggctattgcaagcaagcaaggaaga
gcattgacgcgacaaaaaggtaatgcagagattaatctgcatattgatgcttatttacct
agtgattatatcaaagacgagcgtcaaaaaattgacatttataagcgcattcgtgagatt
gactctagagcagcttattctgatttgcaagatgaaatcatggatcgttttggtgactat
cctgatcaggtagcctatttactggagattggcttgttgaaatactacttggatacagcc
tttgctgaattagtcgagaagagggaccatcaggttatggttaggtttgaggttgcttcg
cttcaatactatttgacacaggattattttgaggctctgtcaaaaacaagcttaaaagca
aggattagtgagcatcagggtaaaattgaaattatctttgatgttagacgtcagaaagac
catgtcattttagaagaattgatactttttggagagacacttggtgagattaaatctaga
aaagcttcctcataa
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integrated database retrieval system
