Streptococcus equi subsp. equi 4047: SEQ_0670
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Entry
SEQ_0670 CDS
T00877
Name
(GenBank) DEAD box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
seu
Streptococcus equi subsp. equi 4047
Pathway
seu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SEQ_0670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seu03019
]
SEQ_0670
03009 Ribosome biogenesis [BR:
seu03009
]
SEQ_0670
Enzymes [BR:
seu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SEQ_0670
Messenger RNA biogenesis [BR:
seu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SEQ_0670
Ribosome biogenesis [BR:
seu03009
]
Prokaryotic type
rRNA helicases
SEQ_0670
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
DUF1924
Motif
Other DBs
NCBI-ProteinID:
CAW93007
UniProt:
C0M957
LinkDB
All DBs
Position
652853..654469
Genome browser
AA seq
538 aa
AA seq
DB search
MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL
NKIRTADNTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKSGA
HVVVGTPGRLLDLIKRKALRLDHVETLILDEADECLNMGFLEDIEAIISRVPDDRQTLLF
SATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPE
LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAA
RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMIEHLTKK
RMKPLKPATAEEAFQAKKKVALKKIERDFADDAIRSNFEKFKGDAMKLAAEFTPEELALY
ILSLTVQDPDTLPEVEIAREKPLPFKYVGGGHGNKNGKTGRGNRSRSGRDNRRGGYRHEK
RNVYDGDRRPRRDKRDSHDSSGSYDFKRKQKRSNKDLHKKGKAVEAKTSGFIIRHKGN
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagcatttaacttatcagaagatattcagtcagctgttgttacagcaggc
tttgaaaaagcctctcctattcaggagctgaccattccgttagccttggagggacgagat
gttatcggacaggctcagacaggaacaggaaaaacagcagcctttggtctaccaactctg
aataagattcgtacagccgataacaccattcaggcattggtgattgctccgacgcgtgag
ctggctgtccaaagtcaggaagagctgttccgttttggtcgtgataaaggcgtcaaggtt
cgctcagtatatggtggctcaagcattgagaagcaaattaaggccctaaagtctggggcg
catgtcgttgttggaacgccaggacgtctgttagatttgattaagcgtaaggccttgagg
ctagaccatgttgagacactcattttagatgaagctgatgaatgcttgaatatgggattt
ttagaggacattgaagcgattattagtcgtgtccctgacgatcgtcaaaccctgttattt
tcagcaacaatgccagctccaatcaaggaaattggtgtcaagtttatgaaggatcctgag
catgttcaggttaaaaacaaggaattaacaaatgtgaatgttgatcaatactatgtgcgt
gttaaggagcaagaaaaatttgataccatgacacgtctgatggacgttcagcagccagag
ctatcaattgtatttggtcgcacaaagcgtcgtgttgatgaaatcacgcgcggcttaaaa
ttgcgtggttttcgcgcagaagggatacatggtgaccttgaccaaaataagcgccttcgt
gtcatacgcgactttaaaaatgatcaacttgatattttagtggcaaccgatgttgctgcg
cgtgggcttgatatttcaggcgttactcatgtgtacaattacgatattacacaggatcca
gaaagctatgtgcaccgtattggccggaccggtcgtgcaggtaagtcaggggaatccatt
acctttgtctcaccaaatgagatgggctatctgaccatgattgagcacctgactaagaag
cgcatgaagccactcaagccagctacggcagaggaagcctttcaggctaagaaaaaggtt
gccctcaaaaaaattgagcgtgattttgcagatgatgctattcgctcaaactttgagaaa
tttaagggcgatgcgatgaaattggcagcagagtttaccccagaggagctagcgctctat
atccttagcttgaccgtccaagatccagataccttaccagaggttgagatagcgcgtgaa
aagccattaccgtttaagtatgttggtggtggtcatggcaataaaaatggcaagacaggt
cgtggcaatcgtagtcgtagcggtcgtgataaccgtcgaggtggctatcgtcatgagaaa
agaaatgtttatgatggtgaccgccgtccaaggcgtgataaacgtgacagtcatgatagc
agtggtagctatgactttaagcgaaagcaaaaacgctctaacaaggacctgcacaagaag
ggcaaggctgtcgaagctaagacgtctggatttattatccgtcataaagggaactaa
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