Saccharomyces eubayanus: DI49_0470
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Entry
DI49_0470 CDS
T08138
Name
(RefSeq) SSD1-like protein
KO
K18748
protein SSD1
Organism
seub
Saccharomyces eubayanus
Brite
KEGG Orthology (KO) [BR:
seub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seub03019
]
DI49_0470
Messenger RNA biogenesis [BR:
seub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
DI49_0470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Dis3l2_C_term
CSD2
OB_RNB
Rrp44_CSD1
HisG_C
Rrp44_S1
Motif
Other DBs
NCBI-GeneID:
28929608
NCBI-ProteinID:
XP_018223835
LinkDB
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Position
II:complement(817727..821491)
Genome browser
AA seq
1254 aa
AA seq
DB search
MSKNSNMNNNRSQDPNNMFVQTTGGGKNAPKQIHVAHRRSQSELTNLMIEQFTLQKQLEQ
VQAQQQQLLAQHQQLAQQTGQYLSGNSGPGNHFAPQPPHPHYNSNGNSPNMSAGGNRSRA
HSRNNSGYYQNSYDNNNNNNNNNNNSGPNSHRKTSSQSSIYGHSRRHSLGLNEAKKAAAE
EQAKRISGGEAGVTVKIDPVQSDTGSNTTTEQSEFKFPPPPTSQQGHRRATSNLSPPSFK
FPPNSQGDNDDEFIATSSTHRRTKTRNNEYSPGINSNWRTQSQQSQQQLSPFRHRGSNSR
DYNSLNTLEPPAIFQQGHKHRASNSSVHSFSSQGNSNGGGRKSLFAPYLPQANIPELIQE
GRLVAGILRVNKKNRSDAWVSTDGALDADIYICGSKDRNRALEGDLVAVELLVVDDVWES
KKEKEEKKRRKDASMQHDIIPLNSSDDYHNDASATAATSNNFLSSSSSSDSPNKDDSSIR
RNTSSNINNDNDPLSSPTKTGVKRRSSLKQRPTQKKNDDVEVEGQSLLLVEEEEINDKYK
PLYAGHVVAVLDRIPGQLFSGTLGLLRPSQQANSDNNKPPQSPKIAWFKPTDKKVPLIAI
PTELAPKDFVENADKYSEKLFVASIKRWPITSLHPFGILVSELGDIHDPNTEIDSILRDN
NFLSNEYLDQKNPQKEKSSFQPLPLTAENLEKRRNFTDDNEYNILAISELGWISGFALHV
RNNDDGTVELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQKLVNLLPQSFNDALSLAP
GKESPTISVVYTLDSSTLRVQSTWVGESVISPSNILSLEQLDEKLLSGNPGTYLSLVQEI
ARSFYAVRINDPEAKLLPTLSLLESLDDEKVKVDLNILDRTSGFIVINEIKRKVNSTVAE
KIYTKLGDLALLRRQMQPIATKMASFRKKIQNFGYDVDISSADELIKAVLKIEDDDVRVG
IEILLFKTMPRARYFIAGKVDPDQYGHYALNLPIYAHFTDPMRRYADHVVHRQLKSVIHD
VPYTEDIEALKITSEYCNFKKDCAYQAQEQAIHLLLCKTINDMGNTTGQLLTVATVLQVY
ESSFDVFIPEFGIEKRVHGDQLPLIKAEFDGTNRVLELHWQPGVDSATFIPADEKNPKSY
RNSIKNKFSSTAAEIANIELDKEAESEPLISDPLSKELSDLHLTVPSLRLPSADNNEQNA
LDKFIATTETRIENDNYIQEIHELQKIPILLRAEVGMALPCLTVRALNPFMRRE
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaatagtaacatgaataacaatagatcgcaagatccaaacaacatgtttgta
caaaccacaggaggtgggaaaaatgctccgaagcaaatccatgttgcacatagacgttct
caaagtgaactgacgaatctaatgattgagcaattcactttgcaaaagcaactggaacaa
gtccaagcacaacagcaacaactgctggcccaacatcaacaattggcccaacagacagga
caatatctttcgggaaattcaggcccaggtaatcattttgctcctcaacctcctcaccca
cattacaactcaaatggtaattcacccaatatgagtgctggtggcaatagaagtagagcc
cattcgagaaacaattctggatattatcaaaactcctacgataacaataacaacaataac
aacaacaataataactctggtcctaattcgcacagaaagactagttcacaatctagcatt
tacggtcattcgagaaggcattctttaggtctgaatgaggctaagaaggccgctgctgaa
gaacaggccaaaagaatatctgggggtgaagcaggtgtaactgtgaagatagatcctgtt
caatcagatactggttcaaataccactacagaacagtccgaattcaagttcccgccacca
ccaacctcacaacagggccaccgccgtgcaacttcaaatctatcaccaccttctttcaag
tttccgccaaactcccaaggtgacaatgacgacgaattcatagccacttcttccacacat
cgtcgcacaaagacaagaaacaatgaatattcgccaggtatcaattctaactggaggact
caatcacagcaatcgcaacagcaactgtctccattccgtcacagaggttccaactccagg
gattataattcattaaacactctagagccccctgcgatctttcaacagggtcataagcac
cgtgcttctaattcatctgttcatagtttcagctctcaaggcaatagcaacggaggcggg
cgtaaatccctatttgcaccctatcttcctcaagcaaatattccggaactgatccaagaa
ggaagactagtagctggtattttaagagttaacaagaaaaacaggtcagatgcttgggtc
tctacagatggggctcttgatgccgacatttatatctgcggctccaaagatcgtaataga
gctctcgaaggtgatttggttgccgtagagttattagtcgtcgatgacgtttgggaatct
aaaaaggaaaaagaagaaaaaaagagaagaaaggatgcctctatgcaacacgatattatt
cctttgaacagtagtgacgattaccacaacgatgcatctgccactgcagcaacgagtaat
aattttctatcgtcatcttcgtcatccgactcgccaaacaaagatgactcgtccattaga
agaaatacgtcatcaaacatcaataacgacaacgatcctttatcgtctcccactaaaaca
ggtgtgaagagaagaagttcattaaagcaacgtccaacccaaaagaaaaatgatgatgtt
gaggttgaaggtcaatcgttattgttagttgaggaggaggaaataaatgacaaatacaaa
ccactgtatgcaggtcacgttgttgctgttttggatcgtatccctggtcaattattcagt
ggtacgttgggtctattgagaccatcccagcaagctaacagtgacaataataaaccacct
cagagcccaaaaatagcctggtttaaacctactgataagaaggttccgttaatcgcaatt
ccaacagagttggcaccaaaggactttgttgaaaatgcagataaatactccgagaagcta
tttgttgcctctatcaaacgttggccaatcacatctttgcatccgtttggtattttagtt
tctgaactcggagacattcacgatccaaacaccgaaattgattctattctaagggataac
aatttcctttcaaatgaatatctggatcagaaaaatccacaaaaggagaaatcgagcttt
caaccactgccattaacagcggagaacttggaaaagagaagaaattttacagacgataat
gaatacaacattctcgcaatttcagagcttggatggatctcgggatttgctttacatgtt
agaaacaacgatgatggcacggttgagctaggttgtcatgtcgttgacgtaacaagccat
attgaagagggttcttctgttgacagacgtgctagaaaaagatcatccgcagtatttatg
ccacagaagctcgttaatttactaccacagtccttcaacgacgcactctcactggcaccg
ggtaaagaatctcccaccatatcagttgtatatactctagattcttctactctaagagtt
caatctacttgggtaggagaatcggtcatctctccatcgaatattttatcattggaacaa
ttggatgaaaaattgttaagcggaaaccctgggacctacctctctctggtacaagaaatt
gcaagatcattctatgctgtaagaataaatgaccctgaagccaaattgcttcctacacta
tctttactggagagtttagatgacgaaaaagttaaagtcgacttaaacatcttggataga
acttcaggctttattgtaataaacgaaattaaaagaaaagttaattcgaccgtagcagag
aagatttataccaagcttggtgacttagctcttttgagaagacaaatgcaacctattgca
accaaaatggcgtcattcaggaagaaaatccaaaacttcggttacgatgttgacatcagt
tcggcagatgaactcattaaagcagtgttaaagattgaagatgacgacgtaagagtcgga
attgaaattttactgttcaagactatgccaagagccagatatttcattgccggcaaggtc
gatccagatcagtacggtcattatgctctgaacttacctatctatgctcatttcacagat
ccaatgagaagatatgctgatcatgtcgttcacagacaattaaaatctgttattcacgat
gttccatatactgaagatatagaagcactaaagattacttctgagtactgtaatttcaaa
aaagattgcgcctatcaggcccaagaacaagcaattcacttactcctatgtaaaacgatc
aatgatatgggtaatactactggccagttgttgactgtggccactgtgttgcaagtttac
gagtcttcgtttgacgtctttattccagaatttggtattgaaaaaagagttcacggtgat
caactgcctttgatcaaggccgaatttgacggcaccaatcgtgttttagaattacattgg
caacctggtgtagatagcgcaactttcatcccagcggacgaaaagaatccaaaatcctac
aggaactctatcaaaaacaaattcagttccacggccgcagaaatcgctaatattgaactc
gataaagaagctgagtcagaaccactgatcagtgacccattaagtaaagaacttagcgac
ttgcatttaacggtaccaagtctaaggttaccatccgcggacaacaacgaacaaaatgcc
ttggacaagttcattgctactactgaaactaggatcgaaaatgataactatattcaagaa
atacatgaattacaaaagattcctattttgttgagagctgaagtgggaatggctttgcca
tgcttaaccgttcgtgcattaaatccgtttatgagaagagaataa
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integrated database retrieval system