Saccharomyces eubayanus: DI49_4043
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Entry
DI49_4043 CDS
T08138
Name
(RefSeq) RSE1-like protein
KO
K12830
splicing factor 3B subunit 3
Organism
seub
Saccharomyces eubayanus
Pathway
seub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
seub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DI49_4043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seub03021
]
DI49_4043
03041 Spliceosome [BR:
seub03041
]
DI49_4043
03036 Chromosome and associated proteins [BR:
seub03036
]
DI49_4043
Transcription machinery [BR:
seub03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
DI49_4043
Spliceosome [BR:
seub03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
DI49_4043
Complex B
DI49_4043
Complex C
U2 SnRNP specific factors
DI49_4043
Chromosome and associated proteins [BR:
seub03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
DI49_4043
TFTC complex
DI49_4043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
BBS2_N
Motif
Other DBs
NCBI-GeneID:
28933180
NCBI-ProteinID:
XP_018220022
LinkDB
All DBs
Position
XIII:complement(186595..190668)
Genome browser
AA seq
1357 aa
AA seq
DB search
MWGGGKTAIVGLSPHTAEMRLLYEQATTTMSCSSLNEGLEQNRIGSERKTTMAARDNELY
LYHLTLQKQTNFVHSCIGHFVDLDAGSNNGQSQLCVATETHLELYDTAEGELTLITRFQN
LFTTITSMRSLDLPHAGSTANSSNCPTFLVLTSDSGNLSIVQITRHAGAFKLRTLVNQPL
TRTTLRRASPISYMEVDPNGRCIILSSVEQNKLCFLVDFARELRISSPLEIIRPHMITLD
MTACDVNFNNPCFIALEMDSMAASLSVHLIFYVLELGLNHIVKKADYSVNPSANFILSLP
DLSKYNITTSLNDNNYDRDEDSLFNPFVVIGFENHILIKDMNGFYSLKVQIPQRAAASNP
QKSVTIISGIVQKLKNDFFVLLQSNYGDLFKLTITPDINDRNRPLVKLSYFDTIQNSNQL
HIFKNGYLFALSEMNNNFLFQFEKLGVENDLSKILTSKDPNKPLVFQPSTNLQNLSILSQ
QLNLNPLGSSQISNDSPLSIVTQHHTNSKLLTLTSGVNYSNLISTNLPPNATKLWLIPHP
AATNNNNNLLFISFPKKTMILQIDNESMEELTPDEVARSTFKLSQDTTIHTCLMSSHSII
QVCTTELRQIVPIDKTGFSNKLTWVPPAGIRIICATSSKTQLIVSLSNYELVYFKIDSSS
NSLIELTTHPELDTLPCKLAVEQDSQHSDLLAIADDEGMIKIMSLRDQKEDFLTVISLQL
VNEKVSDMIMVRDPLTRLLNLHVGLVNGVYMRFHIQEIDGLFTDIKRRFLGLKPVVLSYL
NKISMSLNEEEEEEKEEEEEEEEDGNEKKWISCVVCHSASTWVSYTWNNMWNIRPLNGQN
MLSCSKFVNADVQINGVCSISNSGHLNIGQVSGFPTWEKWFHVDEVSIEEQGDKKEDDAG
EESEEDDEDDEEETLKISTFQPRTILSFPNKPKHALFIENHTEVPQCRISLKINDDCIKH
ANSDRSFKLLDNVHCISATIIDFGKKVDHLVISTKDNRLMTYQVLVNKDKSSFDIELLHQ
TKTLSQIHSMLKFKNHLLAAIDSTIILYGLGKKQLLRRSVTETPVSITKIVSMDQWNYER
LAVGDIHESVTLFIWNPTGNVFIPMVDDSIKRHVTTLKFLDEATIIGADKFGNAWTLRCP
SECENIISSHEASELSDGTIKYPLNLINLQQRLPNTYDCKFKFDVLNHLYVNDIIINFHI
LDSISNSDRPGCIYMGLQGTIGCFIPLLSKGNVMTMKKIEKIMSEADDTFYMEYESRKKN
NNMHSEDDEEEPASVVLHRRGDIIDGTICEGSYSIVGRDHQSYRSYYAPVRKVIDGDLCE
NFLRLSLNEQEFLAKDLKNIQINDIIQRINEVRTNYL
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgtggggaggtggcaaaacggcaatagtaggattgtcgccccacacggcagagatgcgt
ctgctatatgagcaagccacgacgacgatgagctgtagtagtttaaacgagggattggaa
caaaacagaataggcagtgagcgcaagacaaccatggctgctagagataatgagctgtac
ttgtaccatctgacgttgcagaagcagacgaatttcgtgcactcgtgtattggccacttc
gtggacctggacgcagggtccaataatggccagtcgcaactgtgcgttgccactgagacg
cacttagagctctatgacacggcggaaggggagctgacactgattaccaggttccagaac
ctgttcacgacgataacatcgatgaggtcgttggacttgccgcatgccgggtccacggcg
aattcttccaattgccccactttcctagtgttgacatcagactctggtaatttaagcatt
gtgcagatcactaggcatgcaggcgcgttcaaattaaggacgttggtgaaccagccgttg
accaggaccactctgcggagggcctctccaatttcgtacatggaagttgaccctaatggg
cgttgtataatcctgtcgtctgtagaacagaacaaactatgctttcttgtggactttgca
cgagaactaaggatctcgtcgcccttagagatcatcagacctcatatgatcacgttagat
atgaccgcatgcgatgtgaatttcaacaacccgtgctttattgccttggaaatggacagc
atggctgcttcactctcggtacatttgatattttacgttttggagttggggttgaaccat
attgttaagaaagctgattattcagtcaatccgtctgctaatttcattttgagtttaccg
gatttgtcgaagtataatataacaacctctctgaatgataataactacgatcgtgacgaa
gactctttgttyaatccctttgttgtaattggatttgaaaatcatatactgatcaaggac
atgaacggtttctatagtttgaaagtacaaataccacaaagggccgctgcaagcaacccc
cagaaatctgtaacgatcatctcaggtattgtacagaagcttaaaaatgacttcttcgta
ctcctgcaatctaactacggtgatctttttaaattaaccataactccggacattaatgat
agaaatagacctttggttaaattgagctattttgatacaatccaaaattccaaccaatta
cacatttttaaaaacggttatctttttgcactatctgaaatgaataacaactttcttttc
cagtttgaaaaactaggtgtagagaatgacctctccaagattctaacctcaaaagatcca
aataaaccgctggttttccaaccatctaccaacctgcagaatttgagtatcttgtcccaa
cagttaaatttgaacccattaggtagctcccagatttcgaatgactcgcctttatctatc
gttactcaacatcacacaaacagtaagctattaaccttaacaagcggtgtaaattactct
aacctgatctccactaatttgccacccaacgcaacaaaattgtggttgatacctcatcct
gcagccactaacaataacaacaacctcttgttcattagtttccctaaaaagacgatgata
ttacaaattgacaacgagtctatggaagaattaacccctgatgaagttgcacgttcgact
ttcaaactatctcaggacacgacgattcatacctgtttgatgagctcacattctattatt
caggtatgcactacagaattgagacagattgtaccaattgataaaaccgggttctctaat
aaattgacatgggtgcctccagcaggtattcgtattatatgcgctacatcttcaaaaacc
caattgatcgtatcactatcaaactacgagctagtctatttcaagatagatagttcctcg
aactcattgattgagctgactacacatccggaattggacacattgccttgtaaacttgcc
gtcgagcaggatagccagcatagtgatttattagccatcgctgatgatgaaggtatgatc
aaaataatgtctcttagagatcaaaaggaagatttcttaacagtaataagtttgcagttg
gttaacgaaaaagtctctgacatgatcatggttagagatcccttaactagattgctaaat
ttgcatgttggtttagtgaatggtgtctacatgagatttcacatacaagaaattgatgga
ttgtttactgatataaaaagacgatttcttggtttgaaacccgttgtactgtcatatctg
aataagatatctatgtccctaaatgaagaggaagaggaagagaaagaggaagaggaagag
gaagaggaagatggaaatgaaaaaaaatggatttcatgcgttgtttgccattccgcttct
acgtgggtaagctacacgtggaataacatgtggaatatacggccattaaacggccaaaac
atgttaagctgctccaaatttgttaacgcagacgtacaaataaacggtgtttgttcgatt
tctaactcagggcatttaaacatcggccaggtttccggttttccaacgtgggagaagtgg
tttcatgtggatgaagtaagtatcgaggaacaaggggacaagaaagaggatgatgctggt
gaagaaagcgaagaagatgatgaagacgacgaggaagaaacattaaaaatatccacattc
caacctcgtactattttgtccttccccaataaaccgaaacatgctttgttcatcgagaat
cataccgaagtaccacaatgccgtatatcattaaaaatcaatgacgattgcataaagcac
gcaaattcagatcgctcatttaaactattagacaatgtgcattgcatctccgccacgata
atagacttcgggaaaaaggtcgaccaccttgtaatctctactaaagacaatagattgatg
acataccaagtattggtaaataaggacaaatcatctttcgacattgaattacttcatcaa
acaaaaactttatcacaaatacattccatgctgaaatttaagaatcatttgctggccgcc
atagattccactattatcctgtatggcttaggtaaaaaacaattacttagaagatctgta
accgaaacaccagtatcaataactaaaattgtatctatggatcagtggaattacgaaagg
ttggctgttggggatatacatgaatctgtcacgctatttatttggaatcccacagggaat
gtttttattccaatggtggacgactccattaaacgtcatgtaacaactttaaaatttttg
gacgaggcaacaattattggtgccgataagtttggaaatgcctggactttaagatgcccg
tcagagtgcgagaacatcatatcaagtcatgaggctagtgaattatcagacggtaccatc
aagtacccattgaatttgatcaatttacaacagaggttacctaatacgtatgattgcaaa
ttcaagtttgatgtactaaaccacctctacgttaatgatatcatcataaattttcatatt
ttggacagcatctcaaattctgataggccaggttgtatctatatgggtttacaaggtact
attgggtgctttattccattattatccaaggggaatgttatgaccatgaaaaagatcgag
aaaataatgtcagaggctgatgatacattttatatggagtatgaatcaagaaaaaaaaat
aataatatgcacagtgaagatgacgaagaggaacccgccagtgtcgtgttacacaggcga
ggtgatataattgatggaacgatatgcgaaggatcgtattccattgtaggcagagatcat
caaagctatagaagttattatgctcctgtgcgtaaggttatcgacggtgacctatgtgaa
aatttcttgagactttcactaaacgaacaagaatttttggccaaagatctgaaaaatatt
caaatcaatgatataattcaaaggataaatgaagttagaacaaattatctttag
DBGET
integrated database retrieval system