KEGG   Saccharomyces eubayanus: DI49_4494
Entry
DI49_4494         CDS       T08138                                 
Name
(RefSeq) TEX1-like protein
  KO
K12880  THO complex subunit 3
Organism
seub  Saccharomyces eubayanus
Pathway
seub03013  Nucleocytoplasmic transport
seub03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:seub00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DI49_4494
  09122 Translation
   03013 Nucleocytoplasmic transport
    DI49_4494
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:seub03019]
    DI49_4494
   03041 Spliceosome [BR:seub03041]
    DI49_4494
Messenger RNA biogenesis [BR:seub03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     DI49_4494
Spliceosome [BR:seub03041]
 Complex C
  Other components
   EJC/TREX
    DI49_4494
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    DI49_4494
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_IFT122_1st Beta-prop_EML_2 WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_RIG_2nd Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_EML Beta-prop_HPS5 WDR55 Beta-prop_Vps41 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_IFT140_1st ASA1 Beta-prop_NUP159_NUP214 Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_2nd Beta-prop_VPS8 DUF7683 MIOS_WD40 WD40_like Beta-prop_NOL10_N DUF4130
Other DBs
NCBI-GeneID: 28933631
NCBI-ProteinID: XP_018219640
UniProt: A0ABF7PJF5
LinkDB
Position
XIV:<162458..>163726
AA seq 422 aa
MSSSGTIDIVNQKTITSEVAASVTSKYLESTLSKNNTSDIEDERFIHVSSRSHSRFTSTP
VTPNEVLSLKFHASGSSMAYSRMDGSLTVWFIKDASFDKSVKVYIPDCCGSDKLATDLSW
NPTSLNQMAIVSNSSEISLLLINEITLKASKLRTLSLGSKTKVNSCLYDPLGNWLLAATK
SEKIYLFNVKEDHRLVHSLNVSDISPNPNDVVYSIAWNNNGSHIFVGFKSGHLIILKVRD
EMLEISTKIKAHTGSITGIKIDPWGRYFVTGSSDGNCYIWSLKSLCCERIIQDLDSAVVA
LDVCHLGKILGICTEDEMVYFYDLNEAKLLESKSLANHKSDLVLKFYPDKSWYILSGKND
TLSNHFVKSDKNLITYWKDMFDSSIIEKRRKNNNSSNNHSKRVIKNSDRIVKDRPSRFNS
RK
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgtcatccagtgggactattgatattgttaaccagaaaaccataacttccgaggtagct
gcttcggtaacatcgaaatacctggaaagtacgctttcgaagaataacacaagtgatatt
gaggatgaaaggtttattcacgtcagttcacgttcccattcaaggtttacttccacccct
gtaacccccaacgaggttctttctctgaaatttcatgcttcaggctcatcaatggcatac
agtagaatggacggctctttgacggtttggttcatcaaagacgcaagtttcgataagtct
gtcaaggtttatattccagactgttgtggatctgataaactggccactgatctgtcttgg
aaccctacttccttgaatcaaatggccattgtgagtaattcatcagagatatccttactg
ctgatcaatgagataacactgaaagcatctaaattaagaacactatcattaggaagcaaa
accaaagtcaacagctgcctttatgatcctttaggaaattggttactagctgcaaccaaa
tcggaaaaaatatatctatttaacgttaaggaagaccatcgtcttgttcattctttgaat
gttagcgacataagccctaatcctaacgacgttgtatattccatagcatggaataataat
ggaagtcacatttttgttggctttaagagtggtcatttgatcattttgaaagtaagagac
gaaatgctagaaatatctaccaagatcaaagcacatactggttccattactggtatcaaa
atagatccgtggggaagatactttgtcactggtagcagtgatgggaactgttatatttgg
agcctaaagtcactatgttgcgagagaataattcaagatttagactctgccgtagtagca
ctagacgtgtgtcatttgggtaaaatattaggaatttgtacagaggatgaaatggtgtat
ttctacgatctcaacgaagctaaactactcgaatccaaatctttagccaaccacaaatct
gacctagttttgaaattttatcccgataaatcatggtacattttgtcaggcaagaatgac
acattatcaaaccattttgtaaagagcgacaaaaatctaataacatactggaaagatatg
tttgatagctcaataattgaaaaacgcaggaagaacaataacagcagtaacaaccacagc
aaaagagtcataaaaaatagcgatagaatcgtcaaagacaggccgagtagattcaattct
agaaaatag

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