Shewanella eurypsychrophilus: FM038_000520
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Entry
FM038_000520 CDS
T07746
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03030
DNA replication
seur03410
Base excision repair
seur03420
Nucleotide excision repair
seur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FM038_000520 (polA)
03410 Base excision repair
FM038_000520 (polA)
03420 Nucleotide excision repair
FM038_000520 (polA)
03440 Homologous recombination
FM038_000520 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seur03032
]
FM038_000520 (polA)
03400 DNA repair and recombination proteins [BR:
seur03400
]
FM038_000520 (polA)
Enzymes [BR:
seur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FM038_000520 (polA)
DNA replication proteins [BR:
seur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FM038_000520 (polA)
DNA repair and recombination proteins [BR:
seur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
FM038_000520 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FM038_000520 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QXP44964
LinkDB
All DBs
Position
complement(109290..112040)
Genome browser
AA seq
916 aa
AA seq
DB search
MPKIAENPLVLVDGSSYLYRAYYSPPHLTNSKGEATGAVYGVINMLRSLLNQYEPSQMAV
VFDAKGKTFRNDMYEDYKANRPPMPDDLRTQIAPLHQIIRAMGLPLVCIPGVEADDVIGT
ISTQASKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPEEVKVKFGVGPELIIDFL
ALQGDKSDNIPGLPGVGEKTAVAMLTGAGSVEKILANPEKMPELGFRGSKTMPAKLAEHG
ELLKLSYELATIKLDVELEQNWQDLNITPADKDELIKCFGEMEFKRWLAEILDNKTGSSK
NADTDEEVIKQDIQTEYATILTHEELDAWIDILKSAELIAIDTETTSLNYMDAKLVGISF
AVEAGKAAYLPLGHDYLDAPEQLDQAEALAKLKPLLEDAELKKVGQNLKYDISIFANVGI
KLQGIAFDTMLESYVFNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQIDLET
AAPYAAEDADITLRLHQHLWARLEKEPELASVFTEIELPLIQVLSDIERQGVLIDSMMLG
QQSEELARTIDELEQKAYEIAGEKFNLSSPKQLQALFFEKLGYPIIKKTPKGAPSTAEEV
LVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQSGRVHTSYHQANTATGRLSSSE
PNLQNIPIRTEEGRRIRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKGLLTAFAQGKDI
HKATAAEVFGVDFSEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRAEAQKYIDTYFK
RYPGVLKYMEETRAEAADLGYVTTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAA
DIIKKAMINIANWIEAETNGEIIMIMQVHDELVFEVDIDKAEMMQEKVCQLMADAVSLDV
NLLAEGGIGDNWEQAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaattgccgaaaaccctttagttctagtagatggttcctcatacctttatcgt
gcctattattctcctcctcatctcactaactctaaaggcgaagccacgggtgcagtctat
ggcgtcattaatatgctacgtagcttgcttaaccaatatgagcctagccaaatggcggtt
gttttcgatgcaaaaggcaaaaccttccgtaacgacatgtacgaagattataaggctaat
cgaccgccaatgcctgatgaccttcgcactcagatagcgccactgcatcagattatccgg
gctatggggttaccactagtttgtatccctggtgttgaagccgatgatgtcatcggcacc
atatcaacccaagcgagcaaagaaggcagagccgttcttatcagcactggcgataaagat
atggcacagctagtcgatgaaaatgtcacccttatcaacacaatgaccaataccataatg
gggcctgaagaggtcaaagtgaagtttggtgttggccctgaacttatcattgatttctta
gcattgcagggagataaatccgataatattccaggccttcctggggtcggagaaaaaact
gcagtagcaatgctgacgggggccggtagcgtagagaagattctggctaatcctgaaaaa
atgcccgaactcggctttagaggctctaaaaccatgccggctaagcttgccgaacatggt
gaattactcaaactttcgtatgagttagcaaccattaaattggacgttgagctagaacaa
aactggcaagacctcaatattactcctgcagataaagatgaattaattaaatgcttcggt
gaaatggagtttaaacgttggttagccgaaatcctcgacaacaaaacaggctcaagcaag
aacgctgacactgacgaagaagtcatcaagcaagatattcaaactgaatacgccacgata
ttaactcatgaagagttagatgcctggatagatatacttaaaagtgccgagcttatagcc
atagataccgagacaacgagcctcaattacatggatgcaaagttggttggtatctccttc
gcagtagaagcaggaaaagctgcctaccttccattaggacacgactatctagatgcgcca
gagcagcttgatcaggctgaagccttagcgaaactcaaacccttactggaagatgcagaa
cttaaaaaggtcggccagaatctaaagtacgatatcagtatctttgccaatgtcggcata
aagctccaaggtattgcgttcgatactatgctcgagtcctatgtattcaactctgtggcc
actaagcacaatatggatgacttagctcttaagtatctcggccataagaatattagcttc
gaagaaattgccgggaaaggtgtcaaacagctcactttcaatcaaattgatctggaaaca
gcggctccctacgccgcagaagatgccgatataacactaagattacatcaacacttatgg
gcaagactcgaaaaggaaccagagctagcctctgtgtttaccgaaattgagctgccactc
attcaagtactgtctgatattgaacgacaaggtgtattgatcgatagcatgatgctaggg
cagcagagtgaagaactcgcccgaaccatagatgagttagagcaaaaagcttacgaaata
gcaggtgaaaaatttaacttaagctcacctaaacagctgcaggcactgttttttgaaaag
ttaggctaccctatcatcaagaagacgcctaaaggtgcaccttcaactgcagaagaagta
ttagttgaattagcgttagactacccactgcctaagattatactccagcacagaagctta
gctaagctaaagagtacctataccgataagcttccgttaatggtcaatgcccagagtggt
cgagttcatactagctatcatcaggcgaatacggcaaccggaagactgtcatcgagtgaa
ccaaacttacaaaatattccgatccgtacagaggaaggtcgcagaattcgccacgccttt
attgcccaagaaggcaaaaaggtattagcagcggattactcacaaattgagcttcgtatc
atggcccacctttctcaagataaaggcttactgacggcgtttgcccaaggcaaggatatt
cataaagcgaccgcagcagaagtctttggtgttgatttcagcgaagtcaccacagagcag
agacgtcgcgctaaggctgtaaactttggcctaatttatggcatgtcggcatttgggctt
gctaagcagttagatatccctcgtgcagaggctcaaaagtatatagacacttactttaag
cgctatcccggtgtgcttaagtacatggaagagacccgcgccgaagcagccgatcttggc
tatgtgacaaccctttacggccgccgactctatctaccagccattaaagacaggaatgcc
atgagacgtcaggcagctgaacgggcggcgattaacgcgccaatgcaaggcactgccgct
gacatcatcaagaaggccatgattaacatagccaattggattgaagctgaaacaaatggc
gaaataatcatgatcatgcaagttcacgatgaactggtattcgaggtcgatatcgataag
gctgaaatgatgcaagagaaggtttgccaactcatggccgatgccgtcagcttagatgtc
aatttacttgcagaaggcggtattggagataactgggaacaagcccattag
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