Shewanella eurypsychrophilus: FM038_001705
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Entry
FM038_001705 CDS
T07746
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM038_001705 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_001705 (recQ)
03400 DNA repair and recombination proteins [BR:
seur03400
]
FM038_001705 (recQ)
Enzymes [BR:
seur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FM038_001705 (recQ)
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FM038_001705 (recQ)
DNA repair and recombination proteins [BR:
seur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FM038_001705 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
HEM4
Motif
Other DBs
NCBI-ProteinID:
QPG56280
LinkDB
All DBs
Position
385051..386883
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AA seq
610 aa
AA seq
DB search
MPMEPVTPEPQLDPLSASLQSVFGYRTFRDGQKEVIEQSCQGVDCLVIMPTGGGKSLCYQ
LPALQMPGLTIVVSPLISLMKDQVDSLLQMGVSAAYLNSSLPGEERAKVFQRMHSGELKM
LYVSPERLLQSNFIDRLHELQISLFAIDEAHCISQWGHDFRPEYAALGKLREFFPHVPIM
ALTATADQATRQDICERLTITPFSFLTSFDRPNIRYTVAEKLNAANQLRQFVAAQNGNSG
IIYCSSRRRVDEVAERLRLQGHNADAYHAGKTQEERAAVQDKFLKDQLDIVVATVAFGMG
INKSNVRYVVHYDIPKSVESYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQSEPGP
QQQVEFHKLNTMAAFAEAQTCRRQVLLHYFDESAEEPCGNCDICLDPPKKYNGIQDGQKV
LSCIYRLGQRFGINHLIEVLRGSKAATVLDRGHDKLSTWGIGKDKSHEYWLSIIRQIIHL
GFASQDITRGSSVKLNPSARAVLKGEVELLLAEPRMVLQATTKKRSGSTRAPLNYDRKLF
AKLKSLRRKLAEELDVPPYLVFNDATLAEMAAILPTSPGEMLAVNGVGERKLSRFGGEFL
DEIASHLTDS
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcccatggaacctgtgacacctgaacctcaattagatccactctcagcgagcttacag
tctgtattcggttaccggacatttagagatgggcaaaaagaggtcattgagcaaagctgc
caaggggtagattgtttggtgatcatgcctaccggtggtggtaagagtctttgctatcag
cttcccgcactgcagatgccaggtttgactatcgtggtatcaccattgatttcactgatg
aaagatcaggtggatagtttgctacagatgggcgtctcagcggcttacttaaattcgtcg
ctgccgggcgaggagcgggctaaagttttccaaaggatgcatagtggtgagttaaaaatg
ctctatgtatctccagagcgcttacttcaaagcaattttatcgacaggttgcatgagtta
cagatctctctatttgcgatcgatgaggcgcattgtatatcccagtggggccatgacttc
aggcctgagtatgcagcactgggcaagctgagagagtttttccctcacgtgcctattatg
gcgttgacggctacggcggatcaggcgactcgacaggatatttgtgaacgcttaaccata
accccgttttcttttctgaccagtttcgatcgccccaatattcgttataccgtggcagag
aagctcaatgctgcaaatcagttgcgtcaatttgtggcagctcagaatggcaatagcggt
attatttactgtagcagtcgacgacgtgtcgatgaagtggctgagcggctgcgcttacaa
ggtcataatgccgatgcttaccatgcaggtaagacacaggaagaacgcgctgcagtacaa
gataaattcttgaaagatcagttagacattgttgtggctacggttgcctttggtatgggg
attaacaagtctaatgtacgttatgtggtgcattatgatatccctaaaagtgtagagtct
tactatcaggagacgggaagagcaggacgtgatggtttagattcagaagccttgatgttg
ttcgaccccgcagatattgggcgagtgcgtcacttaattgaacaatctgagcccggcccg
caacaacaagttgaatttcataaattaaataccatggcggcatttgcagaagcgcaaacc
tgtagacggcaggtgttgctacattattttgatgagagcgctgaagagccttgtggtaat
tgtgatatctgtctagatccacccaaaaaatataatgggatccaagatgggcaaaaagtc
ctgtcttgtatctatcgcctcggccaacgatttggtatcaatcaccttattgaagtcttg
cgcggatctaaagccgcgacggttttagatcgtggtcatgataagctatcgacttgggga
ataggtaaagacaagagccatgagtattggctcagtatcatacgtcagatcatacatcta
ggctttgccagtcaagatatcacccgaggatcctcggttaagttaaacccatctgcacgt
gccgtattaaagggagaagttgagctattattggctgaacctagaatggtactgcaagcc
accacgaagaaacgtagtggtagtactcgtgcaccgctgaactatgatcgtaagctattt
gccaagctgaaatcactcagaagaaagttagcagaagagctggatgttccaccctatctg
gtttttaatgatgcgacattagctgaaatggcggcgatactaccaacaagcccaggtgaa
atgttagcggtaaatggagttggcgagcgtaaattgagtcgctttggtggagagtttctc
gatgaaatagccagccatctaactgacagttaa
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