Shewanella eurypsychrophilus: FM038_002605
Help
Entry
FM038_002605 CDS
T07746
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM038_002605 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_002605 (rhlB)
Enzymes [BR:
seur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FM038_002605 (rhlB)
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FM038_002605 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPG56433
LinkDB
All DBs
Position
625620..626927
Genome browser
AA seq
435 aa
AA seq
DB search
MSETHLSNQKFADFSLNEGIKTALNESGFEFCTPIQALSIPILLQKKDIAGQAQTGTGKT
LAFLVATFEHLLSTPVPEGRQINQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYG
GESYEVQRKVLDKGIDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIREEIFYPSM
DEKMKLLLTLIEEDWPEKAIIFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILE
QFTTGELDLLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFA
CEEYALNLPAIEEYITHSIPVCNYDSSALLEDIPAPIRVHRKHNNRPQQGRSGSGRSQGN
RNSGPRRHDRVRRHS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttatctaatcagaagtttgccgacttttcccttaatgaagggata
aaaacagcactaaacgagagcggctttgaattttgtacgcctattcaagcactatcaata
cctattctattgcagaaaaaagatatcgcaggtcaagcacagaccggtacagggaagaca
ttagcattcctggtggcgacttttgaacatctgctatctaccccagttcctgaaggtcgt
caaattaatcagcctcgcgctatgattatggcaccaactcgtgagcttgctattcagatt
gctaaagatgcaactttattagcaaaacatactggcttgaaagtcggtatcgtgtatggc
ggtgaaagttacgaagtgcaacgtaaggtgctagataaaggtatcgatattcttatcggt
accacgggacgtattattgattacgtccgtcaaggcatcattaacttgagtgctattcaa
gctgttgtgcttgatgaagccgatcgtatgttcgatcttggtttcattaaagatatccgc
ttccttttcagacgtatgcctgatgctaaatcgcgtcttaatatgttgttttctgcgact
ttatcgatgaaagtacaggaactggcatacgatcacatgaatgaacctgaaaaggtcgtc
attgcgcctaacgaaaaaacctctaaaaatatcagagaagagatcttctatccatcgatg
gatgagaagatgaagttactactgactttgattgaggaagattggcccgagaaggcgatt
atcttctctaatactaagcacagctgtgaaaatgtctggtcttggttatcaggtgacggc
cacagagtgggcttgctaactggtgatgtaccacagaagaagcgtattcgtatactcgag
cagttcactactggtgaattagatctattagttgctacagatgttgctgctcgtggtcta
cacatctctgatgtttcacacgtgtataactacgatcttcccgatgactgtgaagattac
gttcatcgtattggccgtacagggcgtgctggtaagaaaggcgtgtcggtgagttttgcc
tgtgaagaatatgcactgaatttaccagcgattgaagagtatattactcattctattcca
gtgtgtaactatgatagctctgcgctgctggaagatattcctgcaccgatacgagtacat
agaaagcacaacaatcgtcctcaacagggacgtagtgggtcgggacgttcgcaaggtaac
cgaaatagcggtccacgccgccatgatcgagttcgcagacactcgtaa
DBGET
integrated database retrieval system
