Shewanella eurypsychrophilus: FM038_003105
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Entry
FM038_003105 CDS
T07746
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM038_003105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_003105
03009 Ribosome biogenesis [BR:
seur03009
]
FM038_003105
Enzymes [BR:
seur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FM038_003105
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FM038_003105
Ribosome biogenesis [BR:
seur03009
]
Prokaryotic type
rRNA helicases
FM038_003105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QPG56522
LinkDB
All DBs
Position
complement(753308..755155)
Genome browser
AA seq
615 aa
AA seq
DB search
MSSNEKTFRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNSIDPNTNAPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLN
ALRRGPQIIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLSEPVHVKIAATTATVDTIEQRFVQVSQHNKLEALVRVL
EVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIII
ATDVAARGLDVERIGHVVNYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRIAPMDVPSPETVTERRLSRLGEQVAEVIAKDSLDFMKGAVAKLCQELEVDTDV
LAAALLQQVQKDRPLQLPSIHERQRDSRDDRNSRDRNDRNDRNPRDRGERSERPRRDSRP
TPTDLGSADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLFDN
VTAIDLPDGMPKDVLEHLRKVRVCGRPLNIREAAGAELPAGGDSRPARRPRKPSGDRRPS
GDRKPHRKGNASKES
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaaaaaactttccgcgaactcggtcttgccgagcctttgttgcgtgct
cttgacgagctcggctacgaaaaaccaactccaatccaggctgcgagtatcgatcctctc
atggccggaaaagacattttaggtcaggcgcaaaccggtacaggtaaaacaggtgctttc
gcactgcctctactgaacagcatcgatccaaatacaaatgccccacaaattttggtactt
gcacctacacgtgaacttgccgttcaggtcgcagaagcttttggtagctacgcaaaattt
atgaaaggtctacacgttctgccaatttacggcggacagagcatgcatcagcaattaaat
gccttgcgtcgtggaccacaaatcatcgtcggtacacctggccgtgttatggaccacatg
cgtcgtggcacacttaagctagattcattaaaagctatggtgcttgatgaagccgatgag
atgctaaaaatgggtttcatcgatgatatcgaatggatccttgagcatacacctaagcaa
cgtcaacttgcgctattctcggcaactatgcctgagcagattaagcgtgtagctaacaag
tatttgtctgagcctgtacacgttaagattgctgcgacaaccgcaactgttgatactatt
gaacagcgttttgtacaagtttcacaacacaacaaacttgaagcactggtacgtgtttta
gaagtagagaagaccgaaggtattatcatcttcgttcgaactcgtaacagttgtgttgag
ctagctgaaaaattagaagcccgcggttacgcatcatcacctctacacggtgatatgaat
caacaagcacgtgaacgtgctgttgaccagcttaagcgtggcaagctagatattattatt
gcaaccgacgtcgcggctcgtggtcttgatgttgagcgtatcggacacgttgtaaactac
gatatcccatatgatactgaagcttacattcaccgtatcggccgtacaggtcgtgctggt
cgtacaggtatggcgattctttttgttacacacagagagatgcgtatgctacgcactatc
gaacgtgcaacgaagagccgcatcgcaccaatggatgttccaagcccagaaacagtgacc
gagcgtcgtctatctcgtctaggtgagcaagttgctgaagttatcgctaaagactcttta
gatttcatgaagggtgctgtagcaaaactttgtcaagagctagaagttgataccgatgta
cttgcagcagcattactgcagcaagttcagaaagatcgtcctctacagttaccatcgatt
cacgaacgtcagcgtgatagccgtgatgatcgtaactctcgtgaccgcaatgaccgtaat
gaccgtaacccacgtgatcgtggtgaacgcagtgagcgcccacgtcgtgactcgcgtcca
actcctactgatttaggttcagctgactcgcttaaggacaatccagacgttaagatgtgc
cgttacatcatcgacgtaggtcgtgataatggtgttggtgttggtaacatcgtaggcgca
gtagccaacgaagcaaatatcgacagccgttacatcggtcaaatccagttatttgacaac
gtgacagcgattgaccttcctgacggaatgccaaaagacgtactagagcaccttagaaaa
gttcgtgtttgtggtagacctttgaacatccgtgaagcagcaggcgctgaactacctgct
ggtggcgatagccgtcctgcacgtcgtccacgtaagccttctggcgaccgtcgtccttca
ggtgacagaaagccacatcgtaagggtaatgcctctaaagagagctaa
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