Shewanella eurypsychrophilus: FM038_003925
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Entry
FM038_003925 CDS
T07746
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
seur
Shewanella eurypsychrophilus
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_003925 (hrpB)
Enzymes [BR:
seur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FM038_003925 (hrpB)
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FM038_003925 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
Cas3-like_C_2
AAA_30
DUF5900
Motif
Other DBs
NCBI-ProteinID:
QPG56666
LinkDB
All DBs
Position
942873..945446
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AA seq
857 aa
AA seq
DB search
MNQLPIHKLLQPLREAFDLNNQVILEAPTGAGKSTALPLAMLDWPELKGKILMLEPRRVA
ARSVAHYIASQRGEQIGAEVGYRVRGESRSSDATRLEIVTEGILTRMIQQDPELTGIDLI
IFDEIHERHLTTDLGLALALEIQGSFREDLKILAMSATLSGLPLSQLMPDACSLTSEGRS
FPVTLAYQSLAESKGRTQASNPYQNRTQVWLEYMGRCIVELLNGDDKHLANSDASIDTAG
SLLAFLPGQGEIIRLHDYLASRLDLKQFSLCPLYGSLPAKAQDKAIAPANDGKRKVVLAT
NVAESSLTIDGITMVVDSGYKRHASFNPRTGVTRLTLKRISQASAAQRAGRAGRLSPGYC
LRLWSQEEQGRLLKADEPEILHSDLVPMALDAACWGVKSINELPMLTQPSTANEAVAWQL
LTLLDIIDAQRKITPHGSQAYQLGCHPRLAHMLLKAKYLSLTQADKYLVGLACLLAGILE
SRTLGRHGVDVSHYLREATQGETGKQVRGWMKKLKVNLDLSQVISSVTSNDIAFLLALAY
PDRIAKSRGVSGYQLANGTGVALSEDDPLARADWLVVADFQESEGRTSGRVYLAAQLDEA
LFKDRLSFLVTGLDYCGWDESKGRFFAETRQRIGQIILSKKTAQKPAPEQIKRAIFEQIR
NKGLDLLSFSPKVTQLQLRAKLARELDAGTSWPDISEQQLLTDLDEWLGPYINDVRSLSQ
LQSLDCYTLLLNLFEWDKQQRLDKLFPCHWPMATGTSAAITYDESGIARLSVRLQEALGM
AQSPILANGKLTVSMELLSPARRPLALTADLASFWQGPYVEVKKEMKGRYPKHLWPDDPA
NTLPTKFTKKKTLNRKT
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcaattaccgatacacaaacttctacagcctttaagagaggcttttgacctcaat
aaccaagttattttagaggcgcctacaggcgcgggtaagtcgacggctctgccgctggct
atgctagattggcctgaactgaaaggtaaaatactgatgctcgagccaagacgagtcgca
gcgagaagcgtggctcattatattgccagtcaacgaggtgagcagatcggcgctgaggta
ggttatcgggtcagaggtgagtcaagatctagcgatgcgacgcgattagagatagtgact
gagggaatactgacccgtatgatccagcaagatcccgagttaacggggatcgacctgatc
atctttgatgagatccatgaacgccatctcaccacagatctcggtttagcactggctttg
gagatccaaggatcgtttagagaagatctcaaaattctggcgatgtcggcgacgctttcc
ggcttgccattatctcaattaatgcctgatgcctgctcacttaccagtgaaggacgaagt
ttccccgttacgctagcgtatcagagtttagctgagtcaaaggggcgaactcaggcttca
aacccctatcaaaaccgcactcaggtatggctagagtatatgggtagatgtattgtcgaa
ctgcttaatggtgacgacaagcaccttgctaatagtgacgccagtatagataccgcaggt
tctttgcttgctttccttcccggacaaggggagatcatacgtttacatgactatttagcc
agtcgactggatttaaagcaattttcactctgtcccctgtatggcagtctgcctgctaaa
gcgcaagataaagccatagcgccagccaacgacggcaagcgcaaggtggtgctggctacc
aacgttgccgagtcgagtttgacgattgatggtatcactatggtggtcgattctggttat
aaacgccatgcgagttttaatcccagaacgggtgtgactcgactgacactcaagcggatc
agtcaggcctctgcggcgcagcgagcagggcgtgcgggtcgattatcacctggttattgt
ttgcgactatggagccaagaagagcagggaaggctattaaaggcggatgagccggaaata
cttcatagtgatcttgttccaatggcactggatgctgcttgttggggggtaaagtcaatt
aacgagttacccatgttgacccagccttcaacggctaatgaggctgtggcttggcagtta
ctgactttgttagacattatcgatgcacagagaaaaatcaccccccatggtagccaagct
tatcagttaggttgtcatccaagattagcccatatgttattgaaggcgaagtatctttcc
ctgactcaggcggacaaatatctcgttggtttagcctgcctacttgctggtatcttggag
tcgcgcacgctggggcgacatggcgtcgatgtgagtcactatctcagagaagccactcag
ggagaaactggcaagcaagtacgtggctggatgaaaaagttaaaggttaacctagattta
tctcaggttatctcatctgtcaccagtaacgatattgctttcttgttagcgctggcctat
ccggacagaatcgccaagagccgaggtgtctcgggttatcagctggcaaacggtaccggt
gtggctctcagcgaagatgatcccttagcgagagccgattggctggtggtggcagatttt
caggaaagtgaaggacgaactagcggacgtgtctatctcgctgcccaactagatgaagct
ttgtttaaggatcggttatctttcctggttactggtttagattattgtggctgggatgag
tcgaaggggcgtttctttgctgaaacaagacaaaggatcggtcagataatattgagtaaa
aagacagcccaaaagccagccccagaacagattaaacgggctatttttgaacagatccgt
aataaaggcctagatttactcagttttagccctaaggtgacacaactgcaactgagagcg
aagctagctagagagctcgatgctggtacatcttggccagatatcagtgagcaacagcta
ttaaccgacttagatgaatggctaggcccttacattaatgatgtaagaagcctgtcacaa
ttgcagtcacttgactgttatactctgctgcttaatttatttgagtgggacaagcagcag
cgactcgacaagttgtttccctgtcattggccgatggcaacaggtaccagtgccgcaatt
acttatgatgagtcgggtattgcacgactcagtgtcagactgcaagaggcattaggtatg
gctcaaagccctatcctggctaatggaaagcttaccgtgtctatggagctgctttctcct
gcacgtcgacctttagcattaaccgccgatctagccagtttctggcaggggccttatgtt
gaagtgaaaaaagagatgaaaggccgctatccgaagcatctatggcccgatgatccggct
aatacgttgccaacaaaatttaccaagaaaaagacactaaaccgcaaaacctag
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