Shewanella eurypsychrophilus: FM038_004475
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Entry
FM038_004475 CDS
T07746
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03410
Base excision repair
seur03430
Mismatch repair
seur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FM038_004475 (recJ)
03430 Mismatch repair
FM038_004475 (recJ)
03440 Homologous recombination
FM038_004475 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seur03400
]
FM038_004475 (recJ)
DNA repair and recombination proteins [BR:
seur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FM038_004475 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FM038_004475 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FM038_004475 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QPG56765
LinkDB
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Position
1087346..1089070
Genome browser
AA seq
574 aa
AA seq
DB search
MIHKIVRRAKVDDSHLPESLSPLLKQIYASRGSSAEDCELTLSRLLRPNTMKGLELAASI
IADGIRDHRSILIMGDFDADGATSTCVCMLALKMMGAAQVDYLIPNRFDFGYGLSPEIVA
VAESKGAELLITVDNGISSIEGVAAAKALGMQVVITDHHLPGKTIPDADAIVNPNQQGCS
FASKSIAGVGVAFYLMSALRAELRQRNWYQEQGISEPNLGHLLDIVALGTVADVVALDGN
NRILVEAGLQRVRAGRCRAGITALLEVAKRDPAKIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCDDMMSARRMAAELDGLNAERRDLEADMQQEALKSLESIELNEASLPWGIALFQQ
DWHQGVIGILASRIKDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINSRHPGMI
LKFGGHAMAAGLSLRGKDFEAFEQAYDQGVREMLKPEQLTGEFVTDGSLTPDEMNLNIAQ
ELRNGGPWGQEFPEPLFDGHFKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNIDLKTWP
DATIKHAQVVYKLDVNEFRGNQTVQLMVEQIEPM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgatccataagatagttcgacgtgcaaaagtagatgatagccaccttcccgaatccctt
tctcctcttttaaaacagatctatgccagtcgtggtagctcggcggaggattgtgagctt
actttatctcgtttgctaagacccaataccatgaaaggattggaacttgctgcaagcatt
attgccgatggcattagagatcatcgctctattctgatcatgggtgacttcgatgctgat
ggggcaacctccacttgtgtctgcatgttggcgcttaagatgatgggggcggctcaagtt
gactatcttatccctaatcgttttgacttcggttatggtctcagtcctgaaattgtcgca
gttgctgagagtaaaggtgccgaactattaatcacggtagataacgggatctcgtcgatt
gagggggtcgccgccgctaaggcgctgggcatgcaagtggttattaccgatcaccacctg
ccgggtaagaccattcccgatgccgatgcgatcgtgaaccctaatcagcagggttgtagt
tttgcgagtaaatccattgccggggttggtgttgcgttttacttgatgtcagccctgaga
gccgaattgagacaacgaaattggtatcaagagcagggcattagcgagccgaacctcgga
catctgctcgatattgtggcgttaggcaccgtcgccgatgtggtagcactcgatggtaac
aatcgcattttagtggaagcgggtctgcaaagagtgagagcgggtcgatgtcgtgcagga
ataactgccttgcttgaagttgcaaagcgggatccagccaaaatagtcgcatcagatttt
ggcttcgccgtggggccaagactcaatgcagcagggcgcctcgatgagatggctttgggc
gtcgagacgttactatgcgatgacatgatgagtgctaggcgtatggcggctgaactcgat
ggtttaaatgccgaacgtcgtgacttagaagccgatatgcaacaagaggcgcttaagagt
ttagagtctatagagctcaacgaagcaagcctgccttgggggatcgcactatttcaacag
gattggcatcaaggtgtcatagggattcttgcttcaagaattaaggatagatatcacaga
ccggttatcgcctttgccgatgcgggggaaggtgaaatcaaaggatcggctcgctctatt
aaagggctgcatatgcgcgacctgttagagctgatcaatagccgtcatccaggaatgatc
ctcaagttcggtggccatgctatggctgcaggtttgtcacttcgaggcaaagacttcgaa
gcgttcgagcaagcatacgatcaaggtgtgcgtgagatgctaaaaccagaacagttaact
ggtgagtttgtcaccgatggcagcttgacgcccgatgagatgaacttaaatattgcccaa
gaactacgtaatggtggcccttggggtcaagagttcccagagcccttgtttgatggccac
tttaaagttattcagcaacgtatcgtcggcgagaaacacctcaagctggtgttagagacc
gagtgcggtcaaaccatgctcgatgccatcgcctttaatattgacctgaaaacctggcct
gatgccaccataaaacacgctcaggtagtttataaactcgatgtgaatgagtttaggggc
aatcagacggtgcagttgatggtagagcagatagaacccatgtag
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