Shewanella eurypsychrophilus: FM038_006590
Help
Entry
FM038_006590 CDS
T07746
Name
(GenBank) collagenase
KO
K01387
microbial collagenase [EC:
3.4.24.3
]
Organism
seur
Shewanella eurypsychrophilus
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
seur01002
]
FM038_006590
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
seur02042
]
FM038_006590
Enzymes [BR:
seur01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.3 microbial collagenase
FM038_006590
Peptidases and inhibitors [BR:
seur01002
]
Metallo peptidases
Family M9
FM038_006590
Bacterial toxins [BR:
seur02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
FM038_006590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M9
PPC
DUF1573
DUF4183
Ig_mannosidase
TSP_3
Motif
Other DBs
NCBI-ProteinID:
QPG57141
LinkDB
All DBs
Position
1559263..1563480
Genome browser
AA seq
1405 aa
AA seq
DB search
MRNIIKPINSISSKKSILASAILLTLNLGVLYAPSVQAAEMCGTKTLERQGEVPANQAHC
ITDYGHYFYVNVPYENSNVTITTSGGTFNGSDADILLYDGDDWSGNVELSSTTNSTNDES
ISFVSRAGSRYFKINGNIQETTLEVTVTGGDVPPPMGDYIVFDTNILVDLPVPSISSKAQ
YGNVIPSILAASYSDFEGIASGVNDPIDDVSDAVHYLASTNDLTDPDLNQLLYFLGSYKY
YAPAMSDAEAAKLSIALQAVASMTGFLSTDGGVIQEGYAKALNNFERGAGAAYFKDQLPH
LLATIQYYSKQTNPFGATNAGDATMALLGAIGSAAYYGDGAVKSAYNSNMLDVLSVMRSF
AFLGETSLDMKWSTEADRKWILPHTFIALGKISSIATDEAKARFDSSILEVHGKVIQIIS
VETTETIVTKNYLESAGRQCEASDPLFGSCVVPPKEEDILTVRHECTDKVVIRAQSSISQ
ATLIQSCADIALQETEFHNFFNTGGVPVTGDQNDVIEVVAFASPEDYEKYAPEFFGISTD
NGGMYLEGTPENVGNQARFIAMQCPDSWVGTSCQYIDQIYNLRHEYVHYLDGRFIKAGSY
GSFDYNVSWSEGMAEYMANGAEHTRTLNALKGETIPPLYNLLFMSYEYGDLYQWGYFAMR
YLGEEHPDEVASITAALQAGDNAAYIEVLKGVAERTEAGFEAFVLANSETVSPAAAAIPA
ADTIGSCALAQQYVRKVDANKTEYSVTNTTDTPVSLFWIDNNKGTANFAKNYKTLNLGES
YTASSWSEGDRLMLTDNAMNCLGVAVMEPVQNSFSIDADLVKDVVPEAIPEQDMLGSCEL
VRPHLIKDESHEFTITNTTDYPVRLFRVDNLTGKPKYASAATGFDFGYGTLNKGESYTSD
IWYGDRRIMLADARLNCLSVGVLNNATADFVIDEAIVVNAAAPEVIPAANTIGSCDLMNK
HLTGPFEADFSFTNNSDTPVRVYRVDNETGDLSESFGFTTLATGETYDSVSTWKWFGNRR
AAITNTAGQCLGVAVMTEEGVSNDYEITQELIGGETTPVDSDGDGVIDSQDAFPNDPTES
VDSDGDGVGDNSDAFPNDATETLDSDGDGVGNNADAFPNDATETLDSDGDGVGNNADAFP
NDATETLDSDGDGVGNNADAYPNDPNNGVVQSCGVATITSGQLTLENEECISGGKGSFYV
YVDADNTDLYITTQGGEGDANIYFNADTWASSTNAQSKSELSGNSESLHVVANRGWRYIA
IDTGTSYSGVTVKVSLTDSGTTPVEPPVESEQPNGLADTCATETVQDYGSISDGVPICVK
NGRSSFYINVPAGTQSLTAETGHGVGELELYVGESWPDASSNTGASANSGTIESVTVNQP
TSGWYYVSVQSMPSSEDVTLKVTLK
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacattataaaaccaataaatagtatatcttccaaaaagtctattctagctagc
gctatcttacttacccttaatctaggtgtgctatacgctccctcagtgcaagcggccgag
atgtgtggcactaaaaccttagaacgccaaggggaagtacccgctaatcaagctcattgc
attaccgattatggtcattatttctatgtgaatgtgccctatgaaaacagcaatgtcacc
attaccacatctggtggtacttttaatggcagtgatgccgatattctgctttacgatggt
gatgactggagcggaaatgttgagctaagtagtactaccaacagcactaatgatgagtcg
atctcctttgtatcccgtgcaggctctcgttactttaagattaatggcaacatacaagaa
accactttagaagtcacagtgactggtggcgatgtacctccgccaatgggtgactatatt
gttttcgacactaacattcttgtcgaccttccagtgccatctatttcatcaaaagcacaa
tacggcaatgtgatcccaagcattttggcggcaagctacagtgattttgaaggtattgcc
agtggtgtaaatgaccctattgatgatgtgagcgatgcagttcattacctggctagcact
aacgatctgaccgatccagatttgaatcaactgctttatttcttggggtcgtataagtat
tacgcccctgcgatgtcggatgctgaggcggctaagctgagtatcgcactgcaagcggtt
gcgagtatgactggctttttaagcactgatggcggcgttatccaagaaggctatgccaag
gcactgaataattttgagcgtggtgctggtgcggcttattttaaagaccaactgccacat
ctgttagcgacgattcaatattactctaaacagacaaatccttttggcgctaccaatgcc
ggtgatgcgacaatggcgctactcggtgccataggttctgccgcgtactatggtgatggg
gcggtcaaatctgcctataacagcaatatgctggatgtgctttctgtgatgcgctcattt
gcctttctaggtgaaacctcactggacatgaaatggtccaccgaagccgataggaaatgg
atcttaccccatacctttatcgctctgggtaagatctcgagcatagccaccgacgaggct
aaggcgcgtttcgatagcagcatcctagaggttcatggcaaggtgatccagattatctcg
gttgaaaccactgagaccatagtgactaagaactacttagagtcagcgggccgtcagtgt
gaagcgagcgatcccttgttcggcagctgcgtcgtgccacctaaagaggaagatatctta
actgtacgccatgagtgtaccgataaggtggttatccgcgcgcaatctagtattagccag
gcaacgttaatccagtcttgtgccgatattgctctgcaagagacagagttccataacttc
tttaatacaggcggcgtgccagtcactggcgatcagaacgatgtcatcgaagtggtggcg
tttgccagtcctgaagattatgaaaaatatgcccctgagttttttgggatcagcacagat
aacggtggtatgtacctcgaaggtacgccggagaatgtcggtaatcaggcgcgctttatc
gccatgcagtgtccggattcttgggtgggaacttcttgtcagtatatcgaccagatttat
aatttaagacatgagtatgttcactacctcgatggtcgtttcatcaaggcgggatcatat
ggatcattcgattataatgtttcctggtcagaggggatggctgagtatatggccaatggc
gccgagcatacccgtactctcaatgccttgaagggcgaaacgattccgcctctgtataat
ctgttatttatgtcctatgagtatggtgacttgtatcaatggggctattttgccatgcgc
tacttgggtgaggagcatccggatgaagtcgcctctatcacagcggcgctgcaagctggt
gataacgcggcatacatcgaagtattaaaaggtgtagcggagcgtacagaggcaggtttt
gaagcttttgtgctagcaaattcagaaacagtgtctccagccgctgcggcgatccctgca
gccgataccataggtagttgcgccctggctcagcaatatgtgcgtaaggtcgatgcgaat
aagactgagtattcggtgaccaataccacagatacgccagtgtctctgttttggatagat
aacaacaagggcacggcaaacttcgccaagaactataagacgttaaaccttggtgaaagc
tacacagcttcaagttggagcgaaggtgatcgtctgatgctgaccgataatgcgatgaac
tgtttaggggttgccgtgatggagccggttcagaacagtttctctatcgatgcagattta
gtcaaagatgtggtgcctgaggcaattcctgaacaagatatgctgggcagctgtgagtta
gtgagacctcaccttatcaaggatgaatcccatgaatttactatcactaacaccacagac
tatccggttcgtttattcagagtcgataacctgacgggcaagcctaagtatgccagtgcg
gcaactgggtttgattttggttacggtacgctcaataagggtgagagctacacatccgat
atctggtatggcgatcgtcgtataatgctagcagatgctcgcttgaactgtttaagtgtg
ggtgtactaaacaatgccactgctgactttgtcattgatgaagccatagttgtaaatgct
gcagcgccggaagttatccctgccgctaataccataggcagttgcgacttgatgaataag
catctaacagggccttttgaggcggacttctcgtttactaacaatagcgatacaccagtg
cgagtctatcgtgtagataatgaaactggcgatctgagtgagagctttggtttcacgact
ctagctactggcgaaacatacgatagtgtttcaacttggaaatggtttggtaatcgccgt
gcggcaatcaccaatactgctggccagtgtctaggtgttgctgtgatgactgaagaaggc
gtcagtaatgattacgaaatcacacaggagctcattggtggtgaaacgacgccagtggac
agtgatggtgacggcgtaatcgattcacaagatgccttccccaatgatcccactgaatca
gtcgatagcgacggtgatggtgtgggtgataactcagatgccttccctaacgatgcaacg
gaaaccttggacagcgacggtgatggtgtaggtaataatgccgatgctttccctaacgat
gcaacggaaaccttggacagtgacggtgatggcgtgggtaataatgccgatgctttccca
aatgatgcgactgaaaccttagacagtgacggtgatggcgtgggtaataacgccgatgct
tatccaaacgatcctaataatggtgtcgtgcagagctgtggcgtcgcgacgattacttca
ggccagctgacccttgaaaatgaagagtgtatcagcggtggcaaaggcagtttctatgtc
tatgtggatgctgataacacagatctgtacatcacaacacaaggtggtgagggagatgcc
aacatctactttaatgcagatacttgggcgtcatcaactaacgcgcaatctaagtctgag
ctaagtggtaacagcgagagtctgcatgtggtggctaatcgtggctggcgttatattgct
atcgacacaggcactagctactcaggtgtcactgtgaaggtgagtttaactgattcaggt
acaacaccagtcgagccgccagttgagtcagagcagccaaatggattagccgacacgtgc
gctactgaaactgtgcaagattatggcagcatcagtgacggtgttcctatctgtgtcaaa
aatggtcgctcatctttctatatcaatgtgccagccggtactcagagtttaacggcagaa
actggacacggcgttggagagctggagttatatgttggcgagagctggcctgatgcgagc
agcaacactggcgcatcagctaactctgggacgatagagagtgtgactgtgaatcaacct
acatcgggttggtattatgtttcggtgcaaagtatgcctagcagcgaagatgtgacgcta
aaggtcacccttaaatag
DBGET
integrated database retrieval system
