Shewanella eurypsychrophilus: FM038_010090
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Entry
FM038_010090 CDS
T07746
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM038_010090 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_010090 (rne)
03009 Ribosome biogenesis [BR:
seur03009
]
FM038_010090 (rne)
Enzymes [BR:
seur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FM038_010090 (rne)
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FM038_010090 (rne)
Ribosome biogenesis [BR:
seur03009
]
Prokaryotic type
rRNA processing factors
FM038_010090 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPG57758
LinkDB
All DBs
Position
complement(2372631..2376113)
Genome browser
AA seq
1160 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVIKEGQEVVIQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSELEVPNGMGLIVRTAGVGKDSTEL
SWDLKVLEHHWAAIKEAAESRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEA
KLHVSLVRPDFVDRIKHYDAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRNQREVEN
RMRDAVHLDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHEVEVYVIPDPNMTTP
DYRVLRHRKDDQISESSYKLLEQPEAKLYEPRKLERAATPEPALKGFSTPIKTAEVKTEK
KVVVEAKVNEKEEPGLIAKFFAAITGLFKTEEKKDEAPKPQTSSRNNQNRNNRRPARKND
SRRNDTRRNRDEKDQSQSQSSEKNPRNSRNKRADSNDERSTTDKNEQGKRQSRQDSKPTR
SRPASQDADEQPKQEVARERRQRRNMRKKVRIDSEQSKNLDEQTNETVKADVVVETTAVQ
TKEDKNTRPKRQPRKPRVKAESKSDDTQAVKVTETLEAQPIVEAVKVEQEILGDVNAEPV
TQDQASIAESSVETISAETESGDEKREPREGQRRSRRSPRHLRAAGQRRRREEDDGEVAS
DAAPAFIPNETEMEFQAQAAEEVRSEVAQKQAEVSHASVAAATPAKVEAQTASAAPAKPA
APVASKPVVEKAEAQTASAAPAKPAAPVASKPVVEKAEAQTASAAPAKPATPVASKPVVE
KAEAQTASTVPAKPAAPVASKPVAEKAEAQTASAAPAKPAAPVASKPVVEKAEAQTASAA
PAKPAAPVASKTVVEKAEAQTASAAPAKPAAPVASKPVVEKAEAQTASAAPAKPTTPIKT
EAPTEPVVSPKAEVAVKPAPKATSGSRFGTMVTSDMTKPVVEVRDNVETPAGRQYEVSTS
DEKTEQSKVANSANSEMARP
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaattaatgcaactcaatctgaagagttgcgcgtagccctagttgat
gggcaacagctttacgatcttgatatagaaagtccaggtcatgaacagaagaaagccaat
atttacaagggtaaaattactcgtgtagagccttcacttgaagcagcttttgttgattat
ggtgcagatcgccatggatttttacctctaaaggagatagctagagaatacttcccgaaa
ggttactctttccaaggtcgcccaaacattaaagaggtgattaaagaaggccaggaagtt
gtcattcaaattgataaagaggaacgtggcaataaaggcgctgcattaaccacttttatc
agtttagctggttcttacttagtcttaatgcctaataatcctcgcgccggtggtatttct
cgccgtatcgaaggtgacgagcgcacagaactcaagtcagctctatcagaacttgaagtc
cctaacggcatgggcttaattgttcgtaccgcaggtgtcggaaaagactctacagaacta
tcttgggatcttaaagttcttgagcaccactgggctgcaattaaagaagcggctgaaagt
cgtccagctcctttccttattcaccaagaaagtaatgtcattgtacgtgctattcgtgac
tatttacgccgtgatgtaggcgaagtacttatcgatcacccacgtatttttgaagaagct
aaactgcatgtctctttagttcgtcctgattttgttgacagaatcaagcactacgacgct
gaagtacccttgtttactcattatcaaattgaaactcaaattgaatcagccttccaacgt
gaagtgcgtttgccttcaggtggctcgatagttatcgatccaacagaagcattaacatca
attgatatcaactctgcccgagcaacaaaaggcagtgatattgaagaaactgcgctaaat
actaaccttgaagcagcagatgaggttgcccgtcaattacgtcttcgtgatttgggtggt
cttgttgtcatagattttatcgatatgacaccggttcgtaatcaacgtgaagttgaaaac
agaatgcgcgatgccgttcacctagatagagctcgcgttcaactaggtcggatctctcgt
tttggcttgatggaaatgtcacgacaacgtctcagaccttcactggaagagtctgccgcg
cacttatgtccacgttgtcacggtcagggtactattcgaggaacggaatctctcgctcta
tctattcttcgcctaatggaagaggaagcgattaaagagaacacttcgcaaattgaagcg
attgttcctgttgatgtggcagccttccttctcaatgaaaaacgcaaagctatccgtatc
actgagcaacgccatgaagttgaagtctatgtgatcccagatccgaatatgacaactccg
gactatcgcgtactacgtcatcgtaaagatgatcaaatcagtgaatcaagctacaaacta
ctggaacaacccgaagctaagttatacgagccaagaaaacttgaacgtgcagcaactccg
gagcctgcattaaaaggtttttcaacgccaattaagaccgctgaagtaaaaacagaaaag
aaagtagtcgttgaagctaaagtaaatgaaaaagaggagccaggtttaatcgccaagttc
ttcgctgcgattaccggcctattcaaaacggaagaaaagaaagacgaagcgccaaaaccg
caaacgagttcgcgtaataatcagaaccgaaataatcgtcgccctgctcgcaaaaatgat
tctcgtcgtaatgacactcgccgtaaccgcgatgaaaaagaccaaagtcagagtcagagt
agcgaaaaaaatccacgtaacagccgcaataaacgtgctgattcgaatgacgaacgttca
actactgataaaaacgaacaaggtaaacgtcaatctcgccaagacagtaagccgacgcgt
tctcgtccagcatctcaagatgcagatgaacagcctaagcaagaagtggctagagagcgt
cgtcaacgtagaaatatgcgtaaaaaagtgcgtattgacagcgagcagtcaaaaaatctt
gacgaacaaactaatgagacagtaaaagctgacgtggttgttgaaaccactgcagtgcag
actaaagaagacaaaaacactcgtccgaagcgtcaacctcgcaagccgagagtaaaagcc
gagtctaagtctgatgatacccaagcggtaaaagtgactgaaactcttgaggctcagcca
atagttgaagctgtaaaggtagagcaagagatactaggggatgttaacgcggaacctgtt
actcaagaccaggcatctatagctgaatcaagtgttgaaacaatcagtgctgaaacagag
tctggtgatgaaaagcgcgagcctcgtgaaggtcaacgtcgcagtcgtcgcagccctagg
caccttcgcgccgctggccaacgtcgtcgtcgtgaagaagatgatggtgaagtcgcttca
gatgccgcaccagctttcattcctaatgaaactgaaatggagtttcaagctcaagcggct
gaagaagtgagatctgaagtagcacaaaagcaagctgaagtgagccatgctagtgtagct
gcagcaacacctgcaaaagtagaagctcagactgcttctgcagcaccagctaagccggct
gctcctgtagcgagcaagcctgttgttgaaaaagccgaagcacaaacagcttcagcggca
ccagctaagcctgcagctcctgtagcgagcaagcctgttgttgaaaaagccgaagcacaa
acagcttcagcggcgccagctaagcctgcaactccagtagcgagtaagcctgttgttgaa
aaagccgaagcacaaacagcttcaacggttccagctaagcctgcagctcctgtagcgagt
aagcctgttgctgaaaaagccgaagctcagacagcttcagcggcgccagctaagcctgca
gctcctgtagcgagcaagcccgttgttgaaaaagccgaagctcaaactgcttcagcggcg
ccagctaagcctgcagctcctgtagcgagtaagaccgttgttgaaaaggccgaagctcaa
actgcttctgcggcgccagctaagcctgcagctcctgtagcgagcaagcccgttgttgaa
aaagccgaagcacaaacagcttctgcagctccagctaagcctacaacgccgataaaaact
gaagctccaactgaaccagtcgtgtcgcctaaagctgaagttgcggtgaaaccagcacct
aaagctacatcaggtagccgctttggtactatggtgacatctgatatgactaagccagtc
gtcgaagttagagataacgtagagaccccagcagggcgtcaatatgaagtatcgacttca
gacgagaagacagagcaatctaaagttgccaactcagcaaactctgaaatggcccgtcca
taa
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