Shewanella eurypsychrophilus: FM038_010660
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Entry
FM038_010660 CDS
T07746
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
seur
Shewanella eurypsychrophilus
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_010660 (hrpA)
Enzymes [BR:
seur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FM038_010660 (hrpA)
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FM038_010660 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
NACHT
T2SSE
nSTAND_NTPase5
SLFN-g3_helicase
NTPase_1
TsaE
Motif
Other DBs
NCBI-ProteinID:
QPG57866
UniProt:
A0ABX6V8I9
LinkDB
All DBs
Position
2509037..2512924
Genome browser
AA seq
1295 aa
AA seq
DB search
MGSDLSSQQHPLSNSYLKQCYQSDASRIKRRLFRLNKEVDSDKKRADLDKLEAQAVAAFE
KVERRRQARPEITYPESLPISQKRDEIARAIAGNQVVIIAGETGSGKTTQLPKICLELGL
GCRGLIGHTQPRRLAARSVASRVADELNSPLGEVVGFKVRFADAINQNSYIKLMTDGILL
AELTNDKLLEQYDTIIIDEAHERSLNIDFILGYLKNVLKKRPDLKVIITSATIDLEKFSK
HFNDAPVIEVSGRTYPVETRYRPLVRDEGEDLDLTEGIFEAVDELVAEGPGDILIFMNGE
REIRDVADQLNRRQYRDTEILPLYARLSYGEQSKVFKSHIGRRIVLATNVAETSLTVPGI
RYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVAAGICIRLFADDDFNNR
PEFTDPEILRTNLASVILKMLSVGLGDIEAFPFLQSPDPRYIRDGFLLLEELEAVKQSQG
RLSLTTLGKQLAHIPVDPRLARMVIAANGNGCLHEALVITSALSIQDPRERPMDKKQAAD
EVHKKHSDKDSDFVSFVNLWDHLKLQQKSLSSSQFRKQCKKEFLAYLRVREWQDLYAQMR
QAVHDLKWRLNSEAADYELLHKSLLTGLLSHVGFKDKDNEYLGARNRKFFVFPGSPLARK
GPKWIMAAELTETSRLFARCCAKIQPEWIEPLAGHLVKKNYLEPHFEAKQGSVVALENQI
LYGLTIVNRRKTQYGPVNPLEAREIFIRSALADGELRTNEAFFIKNRDLLKEVEDLEHKS
RRRDILVDEQALVDFYEPRIPEGIYNAPKFFSWWKLERKKTPELLDFEREQLMQRGDSHI
SALDFPDFWHQGNLKLSLSYHFEPSAEDDGVAVHIPVALLNQIEDVDFDWQVPGLREEKC
IALIRSLPKSLRRNFVPAPDYANACMQAMKPFEMSFIDAMCKQLLRMSGVRVSIDDFDLS
QLSKHLLMNFKVEDDSGKLVAQSRDIEQLKASLQGHVTQAIRKVADSGIEKTELTQWSFG
DLPKAFKQKKGNFEVKAFPALVDDKSSVSIKLFDDENEAVRSHQLGLQRLLLINIPSPVK
HLQKTLPNKAKLAMYFNPFGQIQILLDDILSAAVQQLLDEKGLDVRCESDFEQAKDWVRQ
ELNPTAAKIALRVEEILTLYQKVKKRLKGKISLDIAFAMSDIQTQLDKLVFRGFVEACGW
KRLPDMVRYLKAIDNRLDKLPVDPNRDRLHMLSIANVQKELDGQLAKVPRSAAIPESLLE
ARWMIEEYRVSCFAQVLGTAYPISEKRVLNKIEQN
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgggatctgacttgagttcgcaacaacacccgctatctaacagttatttaaaacagtgt
tatcagtccgatgcttcaaggatcaagcgtcgtctctttagactcaataaagaggtcgat
tcggataagaagcgagcggatcttgataagctcgaggctcaggctgttgcagcattcgaa
aaagttgagcgacgccgacaagcccgtccagagatcacctatcctgaaagcttaccaata
tcccagaagcgggatgagattgctcgagcgattgctggcaatcaggtcgttattatcgct
ggggaaacgggctcgggtaagacgactcagttaccaaaaatctgtttagaattaggctta
ggttgtcgcgggttaattggccatactcaaccccggcgtcttgcggcgcgaagcgttgcc
agccgggttgccgatgagcttaatagcccgctcggtgaggtggtaggctttaaagttcga
tttgccgatgccatcaaccaaaactcatatattaagttgatgacagacggtattttactg
gctgaactcactaacgataagcttctcgaacaatatgacaccatcattatcgatgaggct
catgagcgaagcctaaatatcgattttatcttgggttatctcaagaatgtgttgaagaag
cgcccagatcttaaggtgatcatcacctcggccactatcgatctggagaagttctctaaa
cattttaacgatgcaccggttattgaggtctcaggccgtacttatccggtggagactcgc
tatcgtcctttggtgcgggacgaaggtgaagatcttgatctcaccgagggcatattcgaa
gcggtggatgaactggttgccgaagggccaggcgatattttgatctttatgaacggtgag
cgtgagatccgcgatgtagcggatcaactcaaccgtcgtcaataccgcgacaccgagatt
ttaccactctatgcccgcctgtcatatggtgagcagtctaaggtatttaagagtcatatt
ggccgccgaatagtgctggccactaacgttgcagagacatctctgacggttcccggcatt
cgttacgttatcgatcccggtactgcgagaattagccgttatagttaccgaactaaagtt
caacgtctgcctatcgagcctatctcacaagccagtgccaaccagcgtcaaggacgttgt
ggccgtgttgctgcgggtatttgtatccgtttatttgccgatgatgatttcaataacagg
cccgagtttaccgatcctgagatcttaaggactaaccttgcctcggttatcttgaaaatg
ctgtcagtgggccttggcgacatagaagcatttcctttccttcaatcgccggatccccgt
tatatccgtgatggattcctgttactggaagagttagaagcggttaaacaatcacaaggt
cgcttatccttgacgacattgggcaagcagcttgcacatattcccgtggatccacgtctg
gctcgtatggttatcgccgcgaatggtaatggctgtcttcatgaagccttggtcatcacc
tctgccttgtctatacaagatcccagagagcgccccatggacaagaaacaggcggcggat
gaggtgcacaagaagcacagcgacaaggactcagattttgtctcattcgttaatctgtgg
gatcacctaaaacttcaacagaagtccctttccagtagtcagttcagaaagcagtgtaag
aaagagtttcttgcctacttgagggtgcgtgagtggcaagatctctatgcccagatgcga
caagccgtgcatgatttgaaatggcgtctcaacagcgaagctgccgattatgaactgctg
cacaagtctctgctcacaggtctgttgagtcatgtgggtttcaaagataaagacaacgag
tacctcggcgcacgtaatcgtaaattcttcgtatttccaggatcgcctctggcacgaaaa
ggccctaaatggatcatggccgctgagctcaccgagacctcacgcctgtttgcacgatgt
tgtgcaaaaattcaacctgaatggattgagcccttggcaggccatctggttaagaaaaac
tatcttgagccccactttgaggcgaaacagggcagtgtggtggcccttgaaaatcaaatc
ctctatggactgacgattgttaaccgccgtaagacacaatacggccctgtcaatccactg
gaagcgcgtgaaatcttcattcgcagcgccttggccgatggcgagctgcgaaccaacgaa
gccttctttatcaaaaaccgcgacttgctcaaagaggttgaggacttagagcacaaatca
cgtcgtcgagatatcttggtggatgagcaggccttggtggatttctatgagccaaggatc
ccagaagggatctacaacgcaccaaagttcttcagctggtggaagcttgagcgtaagaaa
accccagagttactcgatttcgaacgtgagcaattaatgcagcgaggagatagtcatatc
tcggcgctggattttccggatttttggcatcaaggcaacctaaagctttccttgagttat
catttcgagccttcggccgaagatgatggcgtggctgtgcatattccagttgcgctactc
aatcagatagaagatgtcgattttgactggcaggtccccgggctaagagaagaaaagtgt
attgctttgatacggtctctgcctaagagccttagacgtaattttgttccggcgcccgat
tatgctaatgcctgtatgcaggcgatgaagcccttcgagatgagtttcatcgatgccatg
tgtaaacagttgctgcgcatgagtggcgtgcgcgtgagcatcgatgattttgatctcagt
caattgagcaagcacctgttaatgaattttaaggtggaggatgatagcggcaagttagtg
gctcagtcacgagacattgagcagcttaaagccagcttgcaagggcatgttactcaggct
attcgtaaagttgccgattctggcatcgaaaaaactgagctaacccagtggtccttcggt
gatctaccaaaggcatttaaacagaagaaaggcaatttcgaggtcaaggcatttccggcg
ctagtggacgataaatccagtgtttcgatcaaattatttgatgatgaaaatgaggcggtt
cgctcccatcaactgggtctgcagcgcttgttgttaatcaatataccgtcgccggtgaaa
catctgcaaaaaaccttacccaacaaggctaaactggccatgtactttaaccctttcggt
caaatacagatcttattggatgatattttatcggctgcggtgcagcagctactcgatgaa
aaaggtctggatgtacgctgtgaatcagattttgaacaggctaaagattgggtgagacaa
gagcttaatcctacggcggctaagatagccctcagagtcgaagagatattaaccctgtac
caaaaggtaaagaagcgcttgaagggcaagataagcttagatatcgccttcgcgatgagt
gatatccagactcaacttgataagctcgtattcagaggctttgtcgaggcttgtggctgg
aagcgtttacccgacatggttcggtatttaaaagccattgataatcgcttagacaagctg
cctgtagaccctaatcgcgaccgcttgcacatgctcagtattgccaatgtgcagaaggaa
ctggatggtcaattagctaaagtgccgcgatcggcagctatccctgagtcactgcttgag
gcgagatggatgatcgaagagtatcgagtctcctgttttgcacaagtattagggaccgct
tatccgatctctgaaaagcgcgtattaaataaaatcgagcagaattaa
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