Shewanella eurypsychrophilus: FM038_010725
Help
Entry
FM038_010725 CDS
T07746
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FM038_010725 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seur03400
]
FM038_010725 (recD)
Enzymes [BR:
seur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FM038_010725 (recD)
DNA repair and recombination proteins [BR:
seur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FM038_010725 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
NAT10_TcmA_helicase
SH3_13
AAA_22
SLFN-g3_helicase
UvrD-helicase
UvrD_C
nSTAND3
AAA_16
Herpes_Helicase
AAA_28
DEAD
MeaB
PhoH
TrwB_AAD_bind
CbiA
Flavi_DEAD
SRP54
AAA_29
NTPase_1
AAA_5
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
QPG57878
UniProt:
A0ABX6V5P5
LinkDB
All DBs
Position
complement(2528874..2530913)
Genome browser
AA seq
679 aa
AA seq
DB search
MIQSKQSIKALLKSWEIERLITPLDRHFALELAEFHRQQLDQHNESHNELFLLICALLSH
QLSQQHTCLPIEQISLDNPMNEQTAQCKITCSHAELMALLSQFSAIGVPQDSVPQDSLQE
SSSTPLVLDQGSLYLQRYYQFETQVADKLRYLAQDEVQGLPTATQETLNILFPHNPPKNA
ATESPFPKHESVYDWQKIATATAFTKRLAVITGGPGTGKTTTVTKLLFLMTQEADLTIKL
VAPTGKAAARLSESIKASKVRLKSELAPFADKIDINSLSRVPEEASTLHRLLGVIPNSPQ
FRHHKDNPLRLDLLVVDEASMVDLPMMHKLLSALPSHARLILLGDQDQLASVEAGAVLAD
ICAGLKADKSQSEKWQMCYSAPYAKRLSQLTGHDLSGFISASPGIGDSLCMLMHSHRFKG
DAGIGQLASAVNNSDKSRIMQVWQSGYDELYWIEHQKTSTGNAGLEQLLTQSVSHYRAYL
EMAKDPQSDPLDIIECYNEFRILCAMRAGEYGVDGINQGVKDALKQAKLISPEHEFYPGR
PVIIQSNDYNLGLFNGDIGLILPDSAHQQATHTAPRLMAHFIQADGSILKVLPARLPSHD
TCFAMTVHKSQGSEFSKVAMVLPLWPSQAQKQLLTKELVYTAITRAKHHFTCLGSQTVFE
QASLQATKRSSGLARRLWL
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgatccagtcaaagcaatccataaaagccctgcttaaatcatgggaaatcgagcgactc
atcaccccattggatcgtcattttgcactcgagctcgctgagtttcatcgacaacagctt
gaccagcacaacgagtctcacaatgagttgtttctactcatatgtgccctgctcagtcat
cagctttcccagcagcacacctgtttgcccatagagcaaatctcgctggataaccccatg
aatgagcagactgcccagtgtaaaatcacctgcagtcacgccgaacttatggccttattg
agtcagttcagtgcgattggggtacctcaagatagtgttcctcaagatagcctgcaggag
agtagctcgacgcctctggtattagatcaaggctctctctatctgcagcgctattatcaa
tttgagactcaggtagcagacaaacttagataccttgcccaagatgaggtccaagggcta
cccactgcgacgcaggagaccttgaacatactgtttccccacaatcccccaaaaaatgcg
gccacagagtccccttttcctaagcatgagagtgtgtatgattggcagaagatagccacg
gccaccgccttcaccaaacgcctggcagtaataaccggcgggccaggcacgggaaaaacc
accacagtcaccaaactcctgtttctaatgacccaagaagccgacttgaccatcaagctg
gtcgccccaacgggtaaggcagccgccagactcagtgaatcaatcaaggcctctaaggtg
cgattaaaatctgaactggcccccttcgccgacaaaatcgatatcaatagcttaagccgg
gttcccgaggaagcatcgaccctgcacaggttacttggcgtgatccctaactcacctcaa
tttcgccaccacaaggataatcctctcaggttggatctgttagtcgtcgatgaagcctcc
atggtcgacctgcccatgatgcacaagttactgtcggccttacctagccatgccaggctc
atcttgctgggcgatcaggatcagctggcctcagtcgaagctggcgccgtactcgccgat
atctgcgccgggctcaaggcagacaagagccaatcggaaaaatggcagatgtgttactcg
gctccctatgccaaacgtttatctcagctaacaggtcatgatttaagtggctttatcagc
gcatccccaggcataggtgacagtttatgcatgttgatgcacagccatagatttaagggc
gacgcggggatcggccagttagcaagtgccgtcaataattcagataagtcacgcatcatg
caggtgtggcaatcaggctacgatgagctgtattggattgaacatcagaaaacaagcaca
ggaaatgccggactcgaacagttactgactcagtcagtgagtcactacagggcgtatctg
gaaatggctaaagatccgcaaagtgatcctctggatatcatagagtgttacaacgagttc
cgtatattgtgcgccatgcgcgcgggcgaatacggcgtcgatggcatcaatcagggagtc
aaagacgccttgaaacaggccaagttaatctcgcctgaacacgagttctacccgggacgc
cccgtcatcatacagagcaatgattataacttaggcctgtttaacggtgatatcggcctc
atcttacccgatagcgcccaccagcaagcaacccacacagccccccgcttgatggctcac
tttatccaggccgatggcagtatcttgaaggtactccccgcacgcctgccgagccacgat
acctgtttcgccatgacagtacataagagtcaaggcagtgagtttagcaaggtcgccatg
gtgctccccctctggcccagccaggcgcagaaacagctactcaccaaggagctggtgtat
acggccatcacccgagccaagcatcactttacctgtttggggagtcaaaccgtcttcgag
caggccagcctgcaggcaaccaagcgctcatctggactggcgaggcgactatggctgtag
DBGET
integrated database retrieval system
