Shewanella eurypsychrophilus: FM038_012630
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Entry
FM038_012630 CDS
T07746
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM038_012630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_012630
03400 DNA repair and recombination proteins [BR:
seur03400
]
FM038_012630
Enzymes [BR:
seur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FM038_012630
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FM038_012630
DNA repair and recombination proteins [BR:
seur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FM038_012630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Cas3-like_C_2
SWI2_SNF2
AAA_30
LysC
Motif
Other DBs
NCBI-ProteinID:
QPG58191
UniProt:
A0ABX6V6D1
LinkDB
All DBs
Position
complement(2977037..2979010)
Genome browser
AA seq
657 aa
AA seq
DB search
MSTTSHLQADTILKSHFGFEHFRPGQREVIEHVLSGCSAAAIFPTGSGKSMCYQLPAIAL
PHLTLVVSPLLALIQDQLAFLTQKGINAASIDSMQSREQANEVMNGIRKGQIKVLMISVE
RLNNERFRQFISEIPISLLVIDEAHCISEWGHNFRPDYLKLPRYQQELNIPQTLLLTATA
TPKVIEDMGAKFGIEPANITLTGFYRENLHLAVEGVASKDKIDRLTHWLQNKSGQSGIIY
VTLQQTAEEVAGLLRARNIPASAYHAGMASEVRTKIQHDFMSGQQQIIVATIAFGMGIDK
SDIRFVVHYDLPKSIENYAQEIGRAGRDGANANCLVLANGDNLSTLENFIYGDTPESSAI
TVVLEEILKCSRNLSHNTSGRQEWEVVLNSLSSQSNIRPLSLKTLLVYLELLNVIKPTYS
YFAEYKFKLLKHEIDVLGFFKEERRDFVQAILDSSDKAKIWSTINFDKMDQLYASDRQRV
LKAINYLDEKGMIELQSKQMTQVYEILDGNFDLATMQSALFERFSHKEQSEINRINHLVS
FFTSNSCLSQQLAHYFADANMMTHCGTCSVCLGAQAVLPPQPYLQPLAELDFDAMTIDAT
TKLAKANSAVLLARFLCGLTTPIFTKLKMRNIRGFSRLERYRFEDVKQWVVLNQSQR
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgacttcacatttgcaagcagatacaattttaaaatctcattttggttttgag
cacttcaggccaggccaaagagaagtgattgaacatgttttatctgggtgtagcgcagcg
gctatttttcccacaggttcaggcaagtcaatgtgctatcaattacctgccatcgcgtta
cctcacttaaccttagtcgtatcgcctctattggcactcattcaagatcaattggcattt
ttaacacaaaaaggcattaatgctgcgagcatagattcgatgcaaagccgcgaacaagct
aatgaagtcatgaatgggatccgtaaaggtcagataaaggttctgatgatctccgttgaa
cgactcaataatgaaaggtttaggcaatttatcagtgaaatacccatctctttattggtt
attgatgaagcccattgtatctctgaatggggccataattttcgccctgactatttgaag
ttacctcgatatcagcaagaacttaatattcctcaaaccttgttgttgacggcgacggct
acccctaaagtcattgaagatatgggggcgaaatttggcattgaaccagccaatatcact
ttgaccggcttttatcgtgaaaatttgcatttagccgtcgaaggcgtggctagtaaggac
aaaatagataggttaacccattggttacaaaataaatcaggtcagtctgggatcatatat
gtcaccttacaacaaacagctgaagaggttgctggactgctgagagccagaaatatcccc
gctagtgcctatcatgcgggtatggcatctgaggtgagaacaaagatccaacacgatttt
atgtctggacagcagcaaatcatcgtcgcgaccattgcttttggaatgggtattgataaa
agtgacattcggtttgttgtgcattatgacctacctaaatctattgagaattacgcacaa
gagataggccgagcggggagagatggcgctaacgctaactgcttggtactcgcaaatggt
gataacttaagtacgttggagaactttatttacggtgatacaccagaatcatcggccatt
actgtcgtgcttgaagagatccttaaatgttcaagaaacttgagtcacaacacctcggga
agacaagagtgggaagtggtgctcaatagcctttcttcacagtctaatattcggccctta
tcgttaaaaaccttattggtctaccttgagctgcttaatgttattaagccaacttatagc
tattttgccgaatacaaatttaagctgttaaagcatgaaatagacgtattgggtttcttc
aaagaggaacgccgtgatttcgtccaagctattttggatagttcagataaagcaaaaatt
tggtcaaccattaatttcgataaaatggatcagctatatgccagtgatcgccaaagagtc
ctcaaagcgataaattacttggatgagaaaggcatgatagagctgcaaagcaagcagatg
actcaagtttatgaaatattggatggtaattttgacttggctacaatgcaatcagctttg
tttgaacgcttcagtcataaagagcaaagcgaaattaacaggatcaatcatctagtatcc
ttttttacatcaaactcgtgtcttagtcagcagctcgctcattactttgctgatgctaat
atgatgacgcactgtggtacatgtagtgtgtgtcttggtgctcaagctgtacttcctccc
caaccttatttacaacctttagctgagctcgattttgatgcgatgactatcgatgccacg
actaaactcgctaaagcaaactcagcggtgcttttggctcgcttcttatgtgggttaacc
acgccaatttttaccaagctaaagatgagaaacattagaggttttagtcggttggagcgt
tatcgcttcgaagatgtgaagcaatgggtggtacttaaccagtcccaaaggtag
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