Shewanella eurypsychrophilus: FM038_013010
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Entry
FM038_013010 CDS
T07746
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM038_013010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_013010
Enzymes [BR:
seur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FM038_013010
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FM038_013010
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Flavi_DEAD
UvrD-helicase
HEM4
Motif
Other DBs
NCBI-ProteinID:
QPG58261
UniProt:
A0ABX6V6M2
LinkDB
All DBs
Position
complement(3066462..3067838)
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AA seq
458 aa
AA seq
DB search
MSFSSLGLSQPLLDALNELGYHTPTPIQAEAIPLALKGKSLIAAAQTGSGKTATFVLPIL
EMLSKGETQRKKRARALILAPTRELAIQVNQSIETYGQHLGLKSVAIYGGVDYAPQKQQL
IEGVDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDINKIVDTLPQNRQ
NLLFSATLSRQVRELAKDTSPDAIQLSVTKKTQGKPNIEQWLVTVDKDKKSALLSHLIKQ
NEWPQALIFIETKHGAGKLVSQLEKRGIEAECIHSGRTQAIREQILADFKSGKVRYLIST
GISARGIDIDELPLVINYDLPYPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCMIES
RLEHLIERREIEEFAPKKVVPVSVLNFVPKNKPVRDSKESGPKGRNVKPRSDKGSSRVQS
HKGKPQKSERTNSHTVSNEGSTEDTADNKLPLNPWGRH
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtccttctcctcccttggtttaagccaacctttactcgatgcccttaatgaactcggc
tatcacacgccaacaccgatccaagctgaggcgatcccacttgcgctaaaaggtaaaagt
cttatcgctgcggcccaaaccggcagtggtaaaacggcaacatttgtattgcctattctt
gaaatgctctcaaagggggagacacaaagaaaaaaacgcgccagagcattgattttagcg
ccgacaagagagcttgcgattcaggtcaatcaaagtattgagacctatggtcaacatttg
gggcttaagtctgttgccatatatggtggtgtagattatgcgccgcaaaagcagcagcta
attgaaggtgtagatattgtcgtagccactccagggcgtttacgggatctatatactcaa
cgttcgattcattttgatgaaatcgagatgttagtgctggacgaagctgacagaatgctc
gatatgggctttatcgaagatattaataagattgtcgataccttacctcagaacagacag
aacctgttattttcagccactttatcgagacaagtcagagagctagctaaagacactagc
cctgatgcgattcagctttccgtcactaaaaaaacgcaaggcaagccaaatattgaacag
tggttggttacagtagataaggataaaaagtcggcgttattgagccatttaatcaaacaa
aatgagtggcctcaggcacttatttttatagaaactaagcatggcgctggaaagctggta
agccaacttgaaaagcgtggtatcgaggctgaatgtattcatagtggccgtactcaagcc
attcgtgagcagatcttagctgatttcaaatccggtaaggttcgctacttaatttcgact
gggatctcggcgcgtggtatcgatatcgacgagctacctttggtgatcaattatgattta
ccatacccagctgacgaatacgttcaccgcattggtcgtaccggtagagcgggggctgct
ggtgaggcaatatctttggtgtcgaaagatgattttaagaacctgtgtatgatcgaaagt
cgcttagagcatttgatcgaacgacgtgaaattgaagagtttgcgcccaagaaagtagtg
ccagtttctgtgttgaattttgtgcctaaaaataagccagtaagagacagcaaagaaagt
ggccctaaggggagaaacgttaaacctcgcagtgataaaggctcttcaagagtgcaatca
cacaagggtaagcctcaaaaatctgagcgaacgaatagtcacacagtgagcaacgaaggt
tcaactgaagacactgcggataacaagctaccgctcaatccctggggtcgtcactaa
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