Shewanella eurypsychrophilus: FM038_018385
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Entry
FM038_018385 CDS
T07746
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM038_018385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_018385
Enzymes [BR:
seur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FM038_018385
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FM038_018385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QPG59146
UniProt:
A0ABX6V909
LinkDB
All DBs
Position
complement(4332765..4334033)
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AA seq
422 aa
AA seq
DB search
MSEPITSTATTFASLGLLPELQQALQSLGYEHATPIQAQGIPAILAGQDIMAGAQTGSGK
TAAFALPILNQLSTQKLSESLSEQAPIRALILTPTRELALQVHSSFVKYGKHTQLKSALV
YGGVSIDAQAKVLSAGVDILIATPGRLLDHLRRGSLTLDSIDFLVFDEADRMLDMGFKDE
IDALVSQLPKTRQTLLFSATFDESIYSLSKTLLRDPKLIEVGERNAAAVEIEQRVYAVDS
DRKLELVTHLIKSGELQQVLIFSRKKIAADKLAANLSKADITAQAFHGDLSQGAREKVLQ
AFKQGELRVLVATDVAARGIDIISLNYVVNYELPYKAEDYIHRIGRTGRAGNKGVAITLL
SREDEHLLEEVEVVLDKRLPQQWLEGFEPDLTKSIETPKKGGRNAQKQRAKQRAYRGGKT
RK
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacccattacctcaacggctacaaccttcgcctctctaggcttattacctgag
ttacagcaagccttgcaaagtctgggctatgagcatgcgacgccgattcaagcacaaggg
atcccagccattttagccgggcaagatatcatggccggtgcgcaaactggttcgggtaag
actgcagcgtttgccttacctattcttaatcagctaagcacacagaaactcagtgagtcg
ctcagtgagcaagcccccatacgtgctcttatcttaacgccaactcgtgagcttgctctg
caggtacacagcagtttcgtcaaatacggtaagcatactcagcttaaatcagcattagtg
tatggcggagtgagtatcgatgcccaggcaaaggtattaagtgcgggtgttgatatctta
attgcgacacctggccgtttactggatcatctaaggcgtggctcactgacgttagacagc
attgatttcttagttttcgatgaagccgaccgcatgttagatatgggctttaaagacgag
atagatgcgctagtgagccaactgcctaagactcggcaaaccttgttattttctgccacc
ttcgatgaatctatctacagcctgagcaaaactttattacgtgatcctaaactgattgaa
gtgggtgagcgtaatgctgcggcagttgagattgagcagcgagtctatgcggttgatagt
gacaggaagcttgaactcgttactcacctgataaaatctggagagttacagcaagtactt
atcttcagtcggaaaaaaatcgcggcagataaactcgcggctaatttatctaaggcagat
attactgcgcaagcttttcatggggacttgtcacaaggtgctcgcgagaaagtcttgcag
gcgttcaagcaaggtgagttaagggtgctggtggccaccgatgttgctgcacgtggtatc
gatattatcagccttaactatgtggttaattatgaattgccctacaaagcagaagattat
attcaccgtattggtcgtacgggccgcgctggtaataagggcgtggcaatcaccttactt
agccgtgaagatgaacacctgctcgaggaggttgaagtggtgctagataagcgtctgcct
caacagtggttagagggttttgagcctgatctgactaagagcattgagacacccaaaaaa
ggtggcagaaacgcgcaaaaacagcgtgctaagcaacgtgcttatcgtggtggcaagact
cgaaagtaa
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