Shewanella eurypsychrophilus: FM038_019660
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Entry
FM038_019660 CDS
T07746
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM038_019660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_019660
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FM038_019660
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_3
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QPG59352
UniProt:
A0A550AH94
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All DBs
Position
complement(4619740..4621026)
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AA seq
428 aa
AA seq
DB search
MAQTSVTILRGADTIGGSCIKIRHGEDSIVLDYGAPLMDSCGTSLAAEVVANPTIANGIL
LDIQQQDANPPLAYLLSHAHPDHYGLLATLPKGANIYLSDSSYSMMTIGNLFYPEPLRFN
SLELCQQFSPGKPFQIGPFTVKAFLMDHSAFGACSLLIEVEGKQVFYTGDFRGHGRKTKV
SDYIYSHIKQPDLMLIEGTTLDGGHPQEFPTEASVETAMTEAFSEQGRPAFVVASGSNID
RIVSLYNATKRTGKKLVIDLYQLYLLEALKKHAPGLPPHDGDHLRVIFPKSQLAVIKEKY
GNDFLKYSHRHVNLSKLQGTNYVFRVSPYAMTPYLDAFVGQEVKPKFIYSMWLGYQSKQA
KFAEMTEQYRQSWQYMHTSGHAYLEHLINFSNNIAAKRLVPVHTLNGDKFVEHFENVHLV
KNGEEIIL
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaacttccgtcacaatactacgcggcgcagataccataggtggtagttgcatt
aagattcgtcatggtgaggatagtatcgtattggattacggtgctccactgatggatagc
tgtggtacatctctcgctgctgaagtcgttgcaaatccaacaattgcgaatggtattttg
ctggatattcaacaacaagatgctaatcctcctttagcttatcttttatctcacgcacat
ccagatcattatggcctactcgctacactccctaaaggcgctaacatatacctgtctgat
agcagttactctatgatgactatcggtaatttattttatcctgagccattacggtttaat
tcactggagctatgtcagcagttttcaccaggtaagccgtttcagatcggcccatttaca
gtaaaagcttttttgatggatcactcagcctttggtgcctgcagtttattaatcgaagtc
gaaggcaagcaggtgttctatacgggagattttcgtggtcatggacgaaaaactaaggtc
agtgattatatctactcccatatcaagcagcctgatcttatgctcatcgagggcacgacc
ctcgatggtggtcatccgcaagagtttcccactgaagcttcagttgaaacagccatgaca
gaagcctttagtgagcaaggcagaccagcgtttgtcgtggcctctgggagtaatatagat
aggatagtaagcctctataacgccaccaagcggacaggaaaaaagctggttatcgatctg
taccagctgtatttactcgaagcattgaagaaacatgctcctgggctgcctcctcatgac
ggtgatcacctcagagtcatatttcctaaatctcagttagccgttattaaagaaaagtat
ggtaatgactttctgaaatatagtcatcggcatgtgaatcttagcaagttgcaaggtaca
aactacgtatttagggtgtctccttatgcgatgactccttacttagatgcgttcgttggg
caagaagttaagccgaaatttatctattccatgtggttaggctaccagagtaagcaagct
aaatttgctgaaatgactgagcaatatcggcagtcatggcaatatatgcataccagtggt
catgcatatttggagcatttaattaatttttcaaacaacatagcagctaaacgtttagta
cctgtgcacactcttaacggtgataaatttgtagagcattttgaaaatgtgcatctagtt
aaaaatggtgaagagattattttataa
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