Shewanella eurypsychrophilus: FM038_021040
Help
Entry
FM038_021040 CDS
T07746
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM038_021040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seur03019
]
FM038_021040
Enzymes [BR:
seur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FM038_021040
Messenger RNA biogenesis [BR:
seur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FM038_021040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
HI1480
DUF3110
FXMRP1_C_core
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QPG59590
LinkDB
All DBs
Position
4943285..4944739
Genome browser
AA seq
484 aa
AA seq
DB search
MSFTSLGLSAPILKAVANKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
ELLTRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVIFGGVGIGPQISKL
SKGVDILVATPGRLLDLYNQGAVNFSQLEVLVLDEADRMLDMGFIHDIKKILRVLPAKRQ
NLMFSATFSDDIRKLAKGLVNNPIEISVTPRNATAKSVEQYIYPVDQKQKTAALIHLIKQ
NDWKQVLVFSRTKHGANRIAKNLEAKDLTAAAIHGNKSQGARTKALANFKSGAVRVLVAT
DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRDIER
LIKQTIPRKEVEGFVPTQVVAETDFNERKHGQNRGPRNANGRGNGRNGNSNSRSNDSRSD
SRNSRSSEGKVEHKDGQRSGEAARGHKPTDKNSSHSRRRSGSQSQNSASVGASKPSSNSS
IWGK
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctgggtttatcagctccaattttaaaagccgtagccaataaaggc
tatgaaacaccttcacctattcaagctcaagcaattccagcagtgcttgaaggtaaggat
gtaatggcggcagcccagacaggaacaggtaagacagcaggattcactttgccactttta
gagttattaactcgtggcaatcgcgctcaagcaaagaaagtgcgcgccttagtcttaaca
ccgactcgtgaactagccgctcaagtcgccgagagtgtcgatacctatggtaagtatctg
cctcttaaatctgcagtcatcttcggtggcgtaggcataggtccacagatttctaagcta
agtaaaggcgtcgacattttagttgccacgccaggccgtttattggacctatataaccaa
ggtgcggtgaacttcagccaacttgaagttctggttcttgatgaagccgatcgcatgcta
gatatgggcttcattcatgacatcaaaaaaattcttagagtattgccggctaaacgtcag
aacctaatgttctcagccaccttctccgacgatattcgaaaactggctaaaggcttagta
aacaatcctatcgagatatctgttacaccacgtaacgccacggcaaaaagcgtggagcaa
tatatctacccagtggatcaaaagcagaaaactgctgcactaatacatctaattaagcaa
aatgattggaaacaggtcttagtctttagccgcactaagcatggtgctaatcgcatagcc
aagaacctagaagctaaagatcttactgctgccgccatccatggcaacaagagccaaggc
gcacgtaccaaagcgctggctaatttcaagagtggtgctgttcgcgtactagtcgcaacc
gatatcgcagctcgtggtatcgatatcgaccaacttcctaacgtagtgaacttcgatcta
ccgaatgtgccggaggattatgttcatcgtatcggccgtactggtcgcgccggtgctaat
ggtcaagccgtctcactggtaagtggtgacgagagtaagcttctcagggacattgagcgt
ttgattaagcaaactattcctcgcaaagaagtggaaggttttgtgccaactcaagttgta
gccgaaactgatttcaatgaaagaaaacacggtcaaaaccgtggcccacgcaatgccaat
ggccgtggtaatggccgtaacggaaactctaactcgcgtagtaatgactcacgctctgat
tctcgcaactcgcgcagcagcgaaggtaaggtcgagcataaagatggccaacgtagtggt
gaagccgcacgcggtcataagccaacggataaaaactcgagtcatagccgccgcagatcg
ggttctcagtcacagaacagtgccagtgtaggcgcatcaaagccttcatcaaatagcagt
atttggggtaagtaa
DBGET
integrated database retrieval system
