Shewanella eurypsychrophilus: FM038_024060
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Entry
FM038_024060 CDS
T07746
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FM038_024060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seur03021
]
FM038_024060 (rpoC)
03400 DNA repair and recombination proteins [BR:
seur03400
]
FM038_024060 (rpoC)
Enzymes [BR:
seur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FM038_024060 (rpoC)
Transcription machinery [BR:
seur03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FM038_024060 (rpoC)
DNA repair and recombination proteins [BR:
seur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FM038_024060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
gerPA
Motif
Other DBs
NCBI-ProteinID:
QPG60090
LinkDB
All DBs
Position
complement(5595749..5599975)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIELEKEIEMMREELPSINSETRRKKITKRLKLIEAFFQSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVWDVLDDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECVNGKGEGMAFESIDEVEKAYRTG
FAAIHARIKVRVTETHIAEDGERSEARRIVDTTVGRALLSRILPKGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYAGFHYATVSGASVGINDMVIPAEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKISKAMMDNLSVETVINRDGEEEEQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVSQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVMYPGSEKVLAPRNTLLDEAWCDLLEEHSVDEMIVRSVISCNTDFGVCKACYG
RDLARGHIINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNIQVKNAGTVKL
HNAKHVTSSEGKLVIVSRSSEIAIIDELGREKERYKVPYGTILEKLEESTVAAGEIIANW
DPHTHPIISEVAGSNKFVDMIENVTMTRQTDDLTGLSSIVVMEVGQRPTAGKEMRPAIRL
VGADGNDLMIPGTEVPAQYFLPGNAIVNQDDNATINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEYSGTISFGKETKGKRRLLITPADGGKPYEEMIPKWRNLNVFE
GEKVERGEVIADGAEAAHDILRLRGIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITDAGDSKFLAGEQAEVARVKIANRELEAQGKKPATFDRELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRLIPAGTGYAYHQKRNAAAAAKAAGK
TSEQASSISASEAEQNLADLLNLAGSSD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aagatcggactagcgtcgccagatctgatccgttcttggtcatttggtgaagttaagaag
ccagaaaccattaactaccgtacctttaagcctgagcgtgaaggcttattctgtgcgcgt
atttttggtccagtaaaagattacgaatgtttatgcggtaagtataagcgtcttaagcac
cgtggtgtgatctgtgaaaagtgtggcgttgaagttacacagactaaagtacgtcgtgag
cgtatgggtcacatcgatctagccagcccagttgcacatatttggttcttgaagtcactt
ccgtctcgtatcggtttgatgctagatatgactcttcgtgatatcgaacgtgtactttac
ttcgaatctttcgtagtaatcgagcctggcatgaccagtcttgaacgcggccaaatgctg
acagaagaaaactatctggatgcattggaagagtacggtgatgaattcgaagctaagatg
ggtgctgaagcagttctagaattgctacgtgctatcgagcttgagaaagaaattgagatg
atgcgcgaagaattgccatctatcaattctgagactcgtcgtaagaagatcactaagcgt
cttaagcttattgaggctttcttccaatcaggtaacaagcctgagtggatgatccttaaa
gtgcttccggttctgccaccagatcttcgtccactagtaccactagatggcggtcgtttt
gctacgtctgatttgaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtctaaag
cgtctgttagatttagctgctccagatatcatcgtacgtaacgaaaagcgtatgttgcaa
gaatctgttgatgcgctattggataacggtcgtcgtggtcgtgctattacaggttctaac
aagcgtccgcttaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgtgtggattactctggtcgttcggttattaccgtaggtccaact
cttcgcttacatcagtgtggtcttccaaagaagatggcactagagctatttaagcctttc
atctatggcaagcttgaaggtcgtggtctagcgacaacgattaaagcagctaagaagatg
gtagagcgtgaagtgcctgaagtatgggatgtgctagacgatgtgattcgtgaacatcca
gtcatgcttaaccgtgcgccaacacttcaccgtcttggtatccaggcatttgagccggta
ctgattgaaggcaaagcgattcagcttcacccactcgtttgtgcggcgtacaacgccgat
ttcgatggtgaccaaatggctgttcacgtgccactaactctggaagcacagttagaagca
cgctcgctaatgatgtctaccaacaacattctttcacctgcaaacggtgagccggttatc
acaccgtcgcaagatgttgtattgggtctgtactacaccagccgtgagtgtgttaacggt
aaaggtgaaggtatggcgtttgagtctatcgacgaagtcgaaaaagcttaccgcactggc
tttgctgctatccatgcacgcatcaaggttcgcgtaactgagactcatattgcagaagat
ggtgagcgcagcgaagcacgtcgtatcgtagatactacagtgggtcgtgcattactctct
cgcattctgcctaagggcctttcttatgatctggttaaccagaacatgggtaagaagcag
atctctaagttactgaacacctgttaccgtcaactaggtcttaaagatactgttatcttt
gctgatcaattgatgtatgccggtttccactatgcaactgtttctggtgcctctgtaggt
atcaacgatatggttatcccagctgagaaatacaccttagtagctgatgctgaagctgaa
gttcttgaaattcaagagcagttccagtcaggtcttgtaactgccggtgagcgttacaac
aaggttattgatatctgggcaagtgctaacgaaaaaatctctaaagcaatgatggataac
ctgtctgttgagacagtgattaaccgtgatggcgaagaggaagagcaagagtctttcaac
agtatctacatgatggccgattcgggtgctcgtggtagtgctgcacagattcgtcagcta
gctggtatgcgtggtctgatggctaagcctgatggctcaatcattgaaacgcctattgta
gctaacttccgtgaaggtctaaacgtttcacagtactttatctcgactcacggtgcacgt
aaaggtctagccgatacagcacttaagactgctaactcgggttacctaactcgtcgtcta
gttgatgtggctcaagatttagttgttatcgaagacgattgtggtactcacgaaggtcta
acaatgaagccgcttatcgaaggtggtgatgttgttgagccattgcgtgagcgtgtactt
ggtcgtgtggttgctgtcgatgttatgtacccaggttctgaaaaggtacttgctcctcgt
aatactttgctagatgaagcttggtgtgacttgttagaagagcattcagtcgatgaaatg
atcgtccgttcagtcattagctgtaataccgatttcggtgtttgtaaagcttgttatggt
cgtgatttggctcgtggccatatcatcaaccaaggcgaggctattggtgttgttgctgct
caatctattggtgagccaggaacacagctaacgatgcgtaccttccacattggtggtgca
gcgtctcgagcttcagctgaaaacaacattcaagttaagaacgcgggtactgttaagcta
cataatgctaagcatgttactagcagcgaaggcaagttggttattgtttctcgttcttct
gagatcgccattattgacgaactcggtcgtgagaaagagcgttataaggtcccttacggt
acgattctagagaaacttgaagaatctactgtggcagctggcgagattatcgctaactgg
gatccgcacactcacccgatcatttctgaagtagcgggtagtaacaagttcgtcgatatg
attgaaaacgtcactatgacacgtcagaccgatgatcttacgggtctgtcttcaatcgtg
gtgatggaagtcggtcaacgtccaacagctggtaaagagatgcgtcctgcgattcgtcta
gttggcgctgatggtaatgacttgatgatccctggtactgaagtaccggcgcaatatttc
ctacctggcaacgcaattgtcaaccaggatgataacgctacgatcaacgttggtgatgcg
ttagcacgtattccacaggagtcgtcaaagactcgtgatattaccggtggtctacctcgt
gttgctgatttattcgaagcacgtaagccaaaagagccagcaattcttgctgaatactca
ggtactatctcgtttggtaaagaaactaaaggtaagcgtcgtctgttgatcacgcctgct
gatggtggcaagccatacgaagagatgatccctaagtggcgtaaccttaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgccgatggtgctgaagctgcacatgatatt
ctacgtcttcgtggtattcataaagtggctaactatatcgttaatgaagtccaagacgtt
taccgtcttcagggcgtaaaaattaacgataagcatatcgaagtgatcattcgccagatg
ctacgtaagtgtttaatcactgatgcaggtgatagcaagttcttagctggtgagcaagct
gaagtggctcgcgttaagatcgctaaccgcgaacttgaagcgcaaggtaagaagcctgcg
acattcgatcgtgaacttcttggtattaccaaggcatcactagcgacagagtcatttatc
tctgctgcatcgttccaggaaactactcgtgtacttactgaagcggctgtaggtggtaag
agtgataaactacgcggtctgaaagagaacgtgatcgttggtcgcttgatccctgctggt
actggttatgcttaccatcagaaacgtaatgccgcagctgctgctaaagcagcgggtaag
acgtctgagcaagcatcatcgattagtgcaagtgaagccgagcaaaacttggcagatctg
ctaaatcttgctggaagttctgattaa
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integrated database retrieval system
