Saxibacter everestensis: LWF01_06330
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Entry
LWF01_06330 CDS
T10942
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sevr Saxibacter everestensis
Pathway
sevr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sevr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LWF01_06330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sevr03019
]
LWF01_06330
03009 Ribosome biogenesis [BR:
sevr03009
]
LWF01_06330
Enzymes [BR:
sevr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LWF01_06330
Messenger RNA biogenesis [BR:
sevr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LWF01_06330
Ribosome biogenesis [BR:
sevr03009
]
Prokaryotic type
rRNA helicases
LWF01_06330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WGW13379
LinkDB
All DBs
Position
complement(1315081..1316913)
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AA seq
610 aa
AA seq
DB search
MSDTPTSTETERAPFSELGINEKVLRALSDVGYETPTPIQAVTIPPLLEGRDVVGLAQTG
TGKTAAFAVPVLSHLAERGHHGKAPAALVLAPTRELALQVAEAFASYATHLPGFTVLPVY
GGQSYGPQLAGLRRGAQVVVGTPGRVIDHLKKGTMDLSQLEYLVLDEADEMLRMGFQQDV
EEILATTPDSKQVALFSATMPSSIRKIASKYLNDPREITVKSKTTTGANTRQRFLSVMHS
HKLDALTRILEVEEYDGIIMFVRTKSATEDLADKLRARGYTAAAINGDIPQQARERTINQ
LRDGQIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRTGDAILFVT
PREKHLLRSIERATRQPVSPLEMPSVEDVNASRAERFAARITEALSSEDLSTVRSVVEEY
ERTHDVPATEIAAALAAMVLDGQSLSVEPLPEPGSRSKGVGAGRPGSRGDRRPAGNRTTY
RLDVGRAHRVQPGAIVGAIANEGGINSSDIGHIDIRSDHSLVELPSELPDSTWQALKRTR
VAGELIRLRRDSGRPGRPEHGGRRDDSGRRDFGGRDRDESRGGDREYRGGKSSDGPGRKP
RHKVAGRKTY
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccccaacatccaccgagaccgagcgcgcgccgttttccgaactcggaatc
aacgaaaaggtactgcgcgcactgagcgacgtcggctacgaaacgccgacgccgatccag
gccgtgaccatccccccactgcttgagggccgcgacgtcgtcggactggcgcagaccggt
accggcaagaccgcggcgttcgccgttcccgttctttcgcacctggccgagcgtggccat
cacggcaaggcgccggccgcactggttctggccccaacccgtgagctcgccctgcaggtc
gccgaggcgttcgcctcatacgccacccaccttccaggtttcaccgttcttcccgtctac
ggcgggcagagctacggtccgcagctggcgggtctgcgccgaggcgcacaggtagttgtc
ggaaccccaggccgggtcatcgaccacctgaaaaagggcaccatggacctttcgcagctc
gagtacctggtactcgacgaggccgatgagatgctgcggatgggcttccagcaggacgtc
gaagagatcctggcgacgactccggacagcaagcaggttgcgctgttctccgcgacgatg
cccagctcgatccgcaagattgcgtcgaagtacctcaacgacccacgtgaaatcacggtc
aagtcgaagaccacgaccggcgccaacacccgtcagcgcttcctgtccgtcatgcactcg
cacaagctcgatgcgctgacccgcatcctcgaggtcgaagagtacgacggcatcatcatg
tttgtccggacgaagtcagcgaccgaggacctcgccgacaagctgcgggctcgcggctac
acggcggcggcaatcaacggtgatatcccccagcaggctcgtgaacgcacgatcaatcag
ctgcgcgatggccagatcgacatcctggtggcgacagatgtcgcggcccgcggccttgac
gtcgagcgaatcagcctcgttgtcaactacgacatcccgcacgacaccgagtcatacgtg
caccgcatcggccgcaccggccgcgccggacgtaccggcgacgcgatcctgttcgtcacg
ccgcgggaaaagcacctgctgcgttccatcgaacgcgcaacccgtcagccggtcagccca
ctggagatgccaagcgtcgaagacgtcaatgcatcccgggctgagcgcttcgcagcgcgc
atcaccgaggcactcagctctgaggacctcagcacggtgcgttccgttgtcgaggagtac
gagcgcacccacgacgtaccggccaccgagatcgctgccgcgcttgcggccatggtcctc
gacggtcagtcgctgtcggttgagccgctgcccgaaccaggcagccgcagcaagggtgtt
ggcgcgggtcgcccgggcagccggggcgaccgtcgtccggcgggaaaccgcaccacctac
cggctcgatgtcggccgtgcgcaccgggtacagcccggcgccatcgtcggtgcgatcgcg
aacgagggcggcatcaactcgtccgacatcggccacatcgacatccgctccgaccacagc
ctggtcgaacttccgagcgagcttcccgactcgacctggcaggcactgaagcgcacccgg
gttgccggtgagctgatccggcttcgccgtgactccggtcgtccgggccgtccggaacac
ggcggacgacgcgacgacagcgggcgccgtgacttcggtggccgtgaccgggacgagtcc
cgtggcggcgaccgggagtaccgcgggggcaagagctccgacggcccaggccgcaagcca
cggcacaaagtagccggacgcaagacgtactaa
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