Salmonella enterica subsp. enterica serovar Schwarzengrund: SeSA_A1253
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Entry
SeSA_A1253 CDS
T00743
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sew
Salmonella enterica subsp. enterica serovar Schwarzengrund
Pathway
sew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SeSA_A1253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sew03019
]
SeSA_A1253
03009 Ribosome biogenesis [BR:
sew03009
]
SeSA_A1253
Enzymes [BR:
sew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SeSA_A1253
Messenger RNA biogenesis [BR:
sew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SeSA_A1253
Ribosome biogenesis [BR:
sew03009
]
Prokaryotic type
rRNA processing factors
SeSA_A1253
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ACF92054
UniProt:
A0A0N1QZE5
LinkDB
All DBs
Position
complement(1226659..1229862)
Genome browser
AA seq
1067 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPA
PTPVEPAVSVATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAE
RQQDRRKPRQNNRRDRNERRDTRDNRAGRDGGESRDDNRRNRRQAQQQNAEARDTRQQET
AEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREELPVQETEQEERVQQVQPRRK
QRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRTELAKVDLPVIADIAPEQ
DDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKV
WIRYPIVRPQETQVVEEQREADLALPQPVVAEPQVIAATVALEPQASVQAVENVAVEPQT
VAEPQVPEVVEVETTHPEVIAAPVDEQPQLIAESDTPVAQEVIADAEPVAETADASITVA
ENVADVVVVEPEEETKAEAAVVEHTAEETVIAPAQVVEKPQDVVCVDDHNHASAPMTRAP
APEYVPETPHHSDWQRPSFHFEGKGAAGGHSATRVASAPATRPQPVE
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcgactcagcaggaagagttgcgcgtcgcccttgtagat
gggcagcgtctgtacgatctggatatagaaagccccggacacgagcagaaaaaagcgaac
atctacaaaggcaaaattacccgtattgaaccgagcctggaagcggcttttgttgattac
ggcgcagaacgccacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aactacagcgctcatggtcgcccgaacattaaagacgtgttacgcgaaggccaggaagtc
attgttcaaatcgataaagaagagcgcggcaacaaaggcgcggcgttaaccacctttatc
agtctggcgggcagctacctggtgctgatgccgaataacccgcgcgcgggtggtatttcc
cgtcgcattgaaggcgacgatcgtaccgagttaaaagaagcgctggccagcctggaactt
cctgaaggaatggggcttatcgtgcgtaccgcaggcgtgggtaaatccgccgaagcgttg
cagtgggatttaagcttccgcctgaaacactgggaagccattcagaaagccgctgaaagc
cgtcccgcgccgttcctgatccatcaggaaagcaacgtcatcgtacgcgcgtttcgcgac
tatttgcgtcaggatatcggtgaaatcctgatcgacaatcccaaagtgatggaaatggcg
cgtcagcatatcgccgcgttgggccgcccggattttagcagcaaaattaagctgtacacc
ggtgaaatcccgttgttcagccattaccagatcgaatcgcagatcgagtcagcgttccag
cgtgaagtgcgcctgccctccggcggctccatcgtcattgacagtaccgaagcgttaacc
gccatcgatatcaactccgcccgcgcgactcgcggcggcgatatcgaagaaacggcgttt
aataccaacctggaagcggccgatgagattgcccgccagttgcgtctgcgcgacctgggc
ggcctgatcgttatcgactttatcgatatgacgccggtacgtcaccagcgcgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgggcgcgtattcagattagccatatttcc
cgcttcggcctgctcgaaatgtcgcgtcagcgcctgagcccgtcgctgggcgaatccagt
catcacgtgtgtccgcgctgtagcggtaccggcaccgtgcgcgataacgaatctctgtcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaagagaatacgcaggaagtccat
gccattgttccggtgccgatcgcctcttatctgcttaacgaaaaacggacggcagttaac
gctattgagacgcgtcaggatggcgtccgctgtgtcatcgtcccgaacgatcagatggaa
acgccgcactattccgtgctgcgcgtacgcaaaggggaagaaacgccgaccctgagctac
atgctgccgaagctgcacgaagaagcgatggcgctgccttctgaagaagagtacgccgag
cgtaaacgcccggaacagcctgcgctggcgacattcgctatgccagatgtgcctccggcg
ccgacgcctgtcgaaccggcggttagcgtcgccacggcgaaaaaggataatgttgccgcc
gcgcagcctgcccagccaggtctgtttagccgcttccttaacgcgctgaaacaactgttc
agcggtgaagaaacgaaagccgtcgaaacagccgcgccgaaagcggaagaaaaagcggag
cgtcagcaggatcgtcgcaagccacggcagaacaaccgtcgcgatcgtaacgaacgccgc
gacacccgtgataaccgtgccggacgtgacggcggcgagagccgcgacgataatcgtcgt
aaccgtcgccaggcgcagcagcaaaatgcggaagcgcgcgatacccgccagcaggaaacg
gcggaaaaagtgaaaaccggcgatgagcagcaacagacgccgcgtcgcgaacgcagccgc
cgccgcaatgatgacaaacgccaggcgcagcaggaagtaaaagcgcttaaccgcgaagaa
ctgcctgtccaggagaccgagcaggaagaacgcgttcagcaggttcagccgcgccgcaag
cagcgtcagcttaatcagaaagtccgctttaccaacagcgcagtggttgaaacggttgat
acgccagtcgtcgtcgacgaaccacgcccggttgaaaacgttgaacagcccgttccagcg
ccgcgtaccgaattggcgaaagttgatttacctgtcattgccgatatcgcgccggagcag
gatgatagcgtagaacctcgcgataatactggtatgccgcgtcgctcccgccgttctccg
cgccacctgcgcgttagcggtcagcgtcgtcgtcgctatcgtgacgagcgctacccgaca
caatcgccgatgccgttaaccgtcgcctgcgcgtcgccggaaatggcgtccggtaaagtc
tggatccgctacccgattgtccgtcctcaggaaacgcaggttgttgaagagcagcgtgaa
gcagatctggcgctgccacaaccggttgtcgctgaaccgcaggttatcgctgcgaccgta
gcgttagaaccacaagcgtcggtacaggcggtagaaaacgttgccgttgagccgcagact
gtcgccgaaccacaggtgccggaagtcgtcgaggtcgagacaacgcatccggaagtgatt
gccgcgccggttgatgaacagccgcaactgattgccgaaagcgatacgccggtggcgcaa
gaggttattgctgacgccgaaccggtagcagaaaccgccgacgcgtccattacggtggct
gaaaacgtagctgatgttgtcgttgtcgagccagaagaagagacaaaagcggaagcggct
gttgtggagcacacggcagaagaaaccgttatcgcaccggcccaggtggtggaaaagccg
caggacgttgtctgtgttgacgatcacaaccacgccagcgcgccgatgacgcgtgcgcca
gcgccggaatatgtgccggaaaccccgcaccatagcgactggcagcgtccttccttccac
tttgaaggtaaaggcgcagcaggcggacacagcgccacacgtgtcgccagcgccccggcg
acacgcccacagccggtagaatga
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