Salmonella enterica subsp. enterica serovar Typhi P-stx-12: STBHUCCB_34780
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Entry
STBHUCCB_34780 CDS
T01741
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
sex
Salmonella enterica subsp. enterica serovar Typhi P-stx-12
Brite
KEGG Orthology (KO) [BR:
sex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sex03019
]
STBHUCCB_34780
Messenger RNA biogenesis [BR:
sex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
STBHUCCB_34780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
Motif
Other DBs
NCBI-ProteinID:
AEZ47102
LinkDB
All DBs
Position
complement(3372603..3374483)
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AA seq
626 aa
AA seq
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MTLIGCSLSFYNAVQYKYVSRVQATATAIDTHLVTHDIVSLTPQIDELMIASDIVRVDLL
QGERSVYSHSRARGYRPAGTSDMYRELVVPLIKHPGMSLRLVYQDPMGNYFHSLITTAPL
TLAIGFIVLILFLSVRWLQRQLSGQELLEIRSTRILNGERGANVRGSVYEWPARTSSALD
VLLSEIQFAHEQRSRLDTLIRSYAAQDTKTGLGNRLFFDNQLATLLEDQEKVGVHGVVMM
IRLPDFNLLRDSLGGNQAEEQMFMLINLLSTFIMRYPGSLLARYHRSDFAVLLPHRTLKE
AESIAGQLLKAVDALPANKMLDRDDMVHIGICAWRSGQSTDQVMEHAEAAARNAALQGGN
SWAIYDDTLPEKGRGNVRWRTLIEQMLNRGGPRLYQKPAVTREGRVHHRELMCRIYDGKE
EVSSAEYMPMVLQFGLSEEYDRLQISRLITLLGYWPDENLAMQLTVESLIRPRFQRWLRD
TLMQCEKSQRNRIIIELAEADVCQHISRLQPILRLVNALGVRVAVTQAGLTLVSTSWIKA
LNVELLKLHPSLVRNIEKRTENQLLVQSLVEACAGTPTQVYATGVRSRGEWQTLTKRGVV
GGQGDFFASSQLLDTNVKKYSQRYSV
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
gtgactctgataggttgctcgctaagcttttataacgccgtacagtataagtatgtcagc
cgtgtgcaggcgacggcaacagccattgatacgcacctggtgacccatgatattgtctcg
ctgacgccgcaaatcgacgagctcatgatcgcttccgatattgtgcgtgtcgatctgttg
cagggggagcgcagcgtctacagccattctcgcgccagaggttatcggccagccggcacc
agcgacatgtatcgcgagctggtcgtaccgctgataaaacatccaggaatgtcgctacgt
ctggtttatcaggacccgatgggtaattattttcactcactgatcaccacggcgccgctg
acgctggcgatcggttttatcgttctgattttgtttttatcggtgcgctggctgcagcgg
cagctttccgggcaggagcttctggaaattcgctcaacgcgtattctgaacggcgaacgc
ggggcgaatgtccgcggttctgtttacgaatggccagcgcgcaccagtagcgcgcttgat
gtattgctttccgaaattcagtttgctcacgaacagcgtagtcgcctggacaccctcatt
cgctcctacgccgcgcaggacaccaaaaccggactcggtaaccgtctgttctttgataac
cagctggcgacgctgctggaagatcaggaaaaagtgggagtgcatggcgtggtgatgatg
atccgcttgccagacttcaatcttctgcgcgacagcctgggaggcaatcaggcggaagag
cagatgtttatgcttatcaatctgctatcgacattcattatgcgttacccaggctcgctg
ctggcgcgttatcaccgcagcgactttgccgtgctgctaccgcatcgaacgctgaaagaa
gcggaaagtattgccggacaacttttaaaagctgtcgatgcgctaccggctaacaaaatg
ctcgatcgtgacgatatggtacatatcggcatttgcgcctggcgcagcggacagtccacc
gatcaggtgatggaacatgctgaagccgcggcgcggaatgccgccctgcaggggggaaat
agctgggctatctacgacgacactctgccggaaaaagggcgcggcaatgtgcgctggcgc
acattgattgagcagatgctgaaccggggcggaccgcgactttatcaaaaaccggcggtc
acgcgagaaggtcgcgtacatcatcgggaattgatgtgtcgcatctatgacggtaaagaa
gaggtgagctcggcggagtatatgccgatggtgttgcaatttggtttatcggaagagtat
gacagattacaaattagccgcctgattacgttgctgggctactggccggatgaaaatctg
gcaatgcagttgacggttgagtcgctgattcgtccgcgttttcagcgctggttgcgcgat
acgttaatgcagtgtgaaaaatcacagcgaaatcgcataattattgaacttgcggaggca
gatgtttgtcaacacatcagccggttacaacccatccttcgcttagtcaatgcgcttggc
gttcgggtggcggtgacacaggcgggtttgacgctggttagcacgagctggattaaagcg
ctcaatgtggaattactcaagctgcatccgagtctggtcagaaacattgagaagcgaacg
gaaaaccagcttctggttcaaagtctggtagaggcctgcgcgggcacgcctacgcaggtt
tacgcgacgggcgtccgttcgcgcggcgagtggcagacgctgacaaaacgcggcgtggtt
ggcgggcagggtgatttttttgcctcctcccaactacttgacacaaacgtgaaaaaatat
tcgcaaagatactcggtttaa
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