Salmonella enterica subsp. enterica serovar Typhi P-stx-12: STBHUCCB_38100
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Entry
STBHUCCB_38100 CDS
T01741
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sex
Salmonella enterica subsp. enterica serovar Typhi P-stx-12
Pathway
sex03030
DNA replication
sex03410
Base excision repair
sex03420
Nucleotide excision repair
sex03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STBHUCCB_38100
03410 Base excision repair
STBHUCCB_38100
03420 Nucleotide excision repair
STBHUCCB_38100
03440 Homologous recombination
STBHUCCB_38100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sex03032
]
STBHUCCB_38100
03400 DNA repair and recombination proteins [BR:
sex03400
]
STBHUCCB_38100
Enzymes [BR:
sex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
STBHUCCB_38100
DNA replication proteins [BR:
sex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STBHUCCB_38100
DNA repair and recombination proteins [BR:
sex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
STBHUCCB_38100
NER (nucleotide excision repair)
GGR (global genome repair) factors
STBHUCCB_38100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
HHH_5
WHD_BrxR
Motif
Other DBs
NCBI-ProteinID:
AEZ47411
LinkDB
All DBs
Position
complement(3710870..3713656)
Genome browser
AA seq
928 aa
AA seq
DB search
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT
LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK
DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK
GAKPAAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDS
LDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELLKPLLEDEKVRKVGQN
LKYDRGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKG
KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRV
ERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH
QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRD
KGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIP
RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAE
RAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI
HQLMENCTRIDVPLLVEVGSGENWDQAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggttcagatcccagaaaacccacttattctcgtagatggctcatcctatctctatcgc
gcctatcatgcgtttccgccgttaaccaacagcgcgggagaacctacgggcgcaatgtat
ggtgtcctcaacatgttgcgcagcctgatcatgcagtatcagccgacgcatgctgcggtg
gtgtttgacgccaaaggaaaaaccttccgtgacgagctctttgaacactacaaatcgcat
cgtcctccgatgccggatgatctgcgtgcgcaaatagagccgttacatgccatagttaaa
gccatggggttacctctgctggcggtctctggcgtagaagcggatgacgttatcggtaca
ctggcgcgagaagcggagaaggtggggcgtccggtattaatcagcaccggcgataaagat
atggcacagttggtgacgcagaatattacgctgatcaacaccatgactaacaccatcctc
ggcccggatgaagtcgttaataagtacggtgtgccgcctgagctgattattgactttctg
gcgctgatgggggactcctcggataatattccgggcgtaccaggcgtgggtgagaagacg
gcgcaagccttgcttcagggattgggcggcctggatacgctgtacgccgagccggaaaaa
attgccggtctcactttccgcggcgccaaaacgatggccggtaaattagcgcagaataaa
gacgtagcgtacctgtcttataagctcgccaccattaaaacggatgttgagctggagctg
acctgcgaacagcttgaagtgcagcagccgattgcggatgaactgctgggcctgtttaaa
aaatatgagttcaagcgctggacggcggacgtcgaggcaggcaagtggctacaggcaaag
ggcgcgaaaccggcggccaaaccgcaggaaacggtcgttattgatgaatcgcccagcgaa
ccggcagcggcgctctcttatgaaaattatgtcacgattctggatgacgttacgctggaa
agctggattgaaaagctgaaaaaagcgccagtttttgctttcgacacggagaccgacagc
ctggataatatcgccgccaacctggtgggcctctcgtttgccatcgaacctggcgttgcc
gcgtatgtacctgtcgcgcatgattatctggacgctccggatcaaatctcccgccagcgt
gctctggaactgctgaagcctctgctggaagatgaaaaagtgcgcaaagtggggcaaaac
ctcaagtacgatcgcggcgtcttgcaaaattacggtattgagctgcgcggtatcgccttc
gataccatgcttgagtcttacattctgaacagcgtcgccggacgccatgatatggacagc
ttgtccgatcgttggctgaagcacaaaactatcacctttgaagacattgccggtaaaggt
aaaaaccagctcacctttaaccagatcgcactggaggaagcggggcgctatgcggcagaa
gatgcggatgtcacgttacagttgcatctcaaaatgtggcctgagctccagcagcacaaa
ggcccgctgaatgttttcgaaaacatcgaaatgccgctggtgccggtactgtcacgcgtt
gagcgcaatggcgtaaaaatcgatcctgccgtcctgcacaaacattcggaagaaatcacg
ctacgtctggcggaactggaaaagaaagcgcatgacattgcgggcgaggcgttcaacctg
tcctcgacgaagcagttgcagaccatcctgtttgaaaagcagggtattaagccgttgaag
aaaacgcctggcggcgcgccgtcaacgtcggaagaggtgctggaagagctggcgctggac
tatccgctgccgaaagtgattctggagtatcgtggtctggcgaagctaaaatccacctat
accgataagctgccgctgatgattaacccgaaaaccgggcgcgtccatacgtcctatcat
caggcggtaacggcgacgggacgtttatcgtccaccgatccgaacctgcaaaatattccg
gtgcgcaatgaagaaggccgccgcattcgtcaggcatttattgcgcctgaggattatctc
atcgtatctgcggactattcacagattgagctgcgtattatggcgcatctttcccgtgat
aaagggctgctcacggcgttcgccgaagggaaagatattcaccgcgcaacggcggcggaa
gtctttggcttgccgctggatagcgtgaccggggaacagcgccgaagtgcgaaagccatt
aactttggcctgatttacgggatgagcgccttcggtctttctcgccagcttaatattccg
cgtaaagaggcgcagaagtatatggatctctacttcgaacgctaccctggcgtgctggaa
tatatggagcgcacccgcgctcaggcaaaagaacaaggctatgtggaaactctggagggg
cgccgcctttacctgccggatattaaatccagcaacgcggcgcggcgcgcgggggcggaa
cgcgcggcgatcaatgctcccatgcaaggaacggctgccgatatcatcaagcgcgccatg
attgccgtcgatgcctggctacaggccgagcagccacgcgtgcggatgattatgcaggta
cacgatgaattagtgttcgaggtgcataaagacgacttagatgcggtagcaaaacgtatc
catcagttgatggaaaactgcacgcgtattgatgtgccgttgctggtggaagtcggtagc
ggagaaaattgggatcaagcgcactaa
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