Salmonella enterica subsp. enterica serovar Typhi P-stx-12: STBHUCCB_46710
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Entry
STBHUCCB_46710 CDS
T01741
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sex
Salmonella enterica subsp. enterica serovar Typhi P-stx-12
Pathway
sex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STBHUCCB_46710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sex03019
]
STBHUCCB_46710
03016 Transfer RNA biogenesis [BR:
sex03016
]
STBHUCCB_46710
Enzymes [BR:
sex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
STBHUCCB_46710
Messenger RNA biogenesis [BR:
sex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STBHUCCB_46710
Transfer RNA biogenesis [BR:
sex03016
]
Prokaryotic type
tRNA degradation factors
STBHUCCB_46710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AEZ48234
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All DBs
Position
4558409..4560847
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AA seq
812 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGNKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGESKNAGKRRQVGKKVNFEPDSAFRGEKKAKPKAAK
KDARKAKKPSAKTQKIAAATKAKRAAKKKAAE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagcagaaaaatacgcgaatcctatcccgagc
cgggaatttatcctcgaacatttaacgaaacgtgaaaaaccggccagtcgcgaagaactg
gccgtagaactgaatattgaaggcgaagagcagcttgaagccttgcgtcgccgcctgcgc
gcgatggagcgcgatggacaactggtctttacccgccgccagtgctatgcgctgccggaa
cgcctcgacctgctgaaaggcaccgtgatcggtcatcgtgatggttacggtttcttacgt
gtcgaaggccgcaaagacgatctgtatctttccagcgagcagatgaaaacctgtattcat
ggcgatcaggtgctggcgcagccgctgggcgccgatcgtaaaggtcgccgcgaagcgcgt
atcgtccgtgtactggtaccgaaaaccagtcagatagtcgggcgttatttcaccgatgcg
ggcgtcggctttgtggtgccggacgacagccgtctcagcttcgacattcttatcccgcca
gaagacgtcatgggcgcgcggatggggttcgtggtcgtggttgaactgacccaacgtcca
actcgccgtactaaagcggtagggaaaatcgtcgaagtgctgggcgacaatatgggtacc
ggtatggcggttgatatggcgctgcgtacccatgaaataccctacatctggccgcaggcg
gtagagcagcaggtcgccgggctgaaagaagaggtgccggaagaggcgaaagtcggtcgt
gtcgatctgcgcgatttgccgctggtcacgattgatggcgaagatgcccgtgactttgac
gacgcggtttactgtgagaaaaaacgcggcggcggctggcgtttgtgggtcgctattgct
gacgtgagctattatgtacggccgccaacgccgttggatcgcgaggcgcgcaatcgcggc
acgtcggtttacttcccgtcacaggttgtcccaatgttgccggaggtgctctccaacggc
ctgtgttcgctaaacccgcaggttgacaggctgtgtatggtctgtgaaatgaccatctcg
gcgaaaggtcggctgaccggctacaaattctatgaagcggtgatgagctcccatgcgcgt
ctgacctataccaaagtctggcatatgctgcagggcgatcaggatctgcgtgaacaatat
gcgccgctggtgaagcatattgaagagctgcacaacctctacaaagtgctggataaagcg
cgtgaagaacgcggggggatctcgtttgagagcgaagaggcgaagtttatctttaacgcc
gagcgtcgcattgagcgtatcgaacagacccagcgtaatgacgcgcataagcttatcgaa
gagtgcatgatcatggcgaatatctcggcggcgcgctttgtcgaaaaagctaaagagccg
gcgttattccgtattcatgataagcccaccaccgaagcgatcacctcattccgctccgta
ctggcggagctggggttggagctgccgggcggaaataaaccggaaccgcgcgattatgcc
gaactgcttgaatcgattgccgacaggccggacgccgaaatgctgcaaactatgctgctg
cgttcaatgaagcaggcgatttacgatccggaaaaccgcgggcactttggcctggcgttg
cagtcttatgcgcactttacctcgccgattcgccgctatccggatctttctttgcaccgc
gccattaagtacctgctggctaaagagcaagggaacaagggcaacaccacagaaacgggc
ggttatcactactcgatggaagagatgttgcagctcggccagcactgttcgatggcggaa
cgccgcgctgatgaagcgacgcgtgatgtctccgactggctgaaatgtgactttatgctg
gatcaggtaggcaacgtctttaagggcgtgattgccagcgtcaccggtttcggcttcttt
gtccgtcttgatgaactgtttatcgatgggctggtacacgtttcctcactggataacgat
tactatcgcttcgatcaggtagggcaacgtctgattggcgaatccggcgggcagacatat
cgcctgggcgaccgggtcgaggtacgcgtcgaagcggtgaatatggacgaacggaaaatt
gactttagcttgatttccagcgagcgcgcaccgcgtaacgtcggcaaaacggcgcgtgaa
aaagcgaaaaaaggtgaaagtaaaaacgccggtaaacgtcgtcaggtaggtaaaaaggtt
aacttcgagcctgatagcgccttccgcggcgagaaaaaagcgaagccgaaagcagcgaag
aaagacgcgagaaaagcaaaaaagccatcggctaaaacgcagaaaatagccgcagcgacc
aaagcgaagcgtgcggcgaagaaaaaagcggcagagtga
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integrated database retrieval system
