Streptomyces explomaris: SLV14_002132
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Entry
SLV14_002132 CDS
T11122
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sexp Streptomyces explomaris
Pathway
sexp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sexp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLV14_002132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sexp03019
]
SLV14_002132
Messenger RNA biogenesis [BR:
sexp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SLV14_002132
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UYB39609
LinkDB
All DBs
Position
complement(2521739..2523424)
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPKGGLRVTPLGGLGEIGRNMTVFEYDGRLLIVDCGVLFPEEEQPGI
DLILPDFTSIRDRLDDIDGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVKEGHTERIGSFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDRRLTDLPAFARLGEEGIDLLLSDSTNAEVPGFVPPERDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARELGYLKVPAGLVVDVKALDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GADVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVRKD
RIVIAEDGVVVDLVDGVAKIVGKVQAGYVYVDGLSVGDVTEAHLKDRRILGDEGIISVYV
VVDSTTGKIVGGPDIHARGSGIDDGAFSGVMPKIDEALAKSAQDGITEPHQLQQLVRRTV
GKWVSDNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgagctcggcgctccgccgaagcttcccaagggtggcctgcgc
gtcacccccctcggcggcctgggtgaaatcggccgcaacatgacggtcttcgaatacgac
ggccggctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gacctgatccttccggacttcacgtccatcagggaccgcctcgacgacatcgacggcatc
gtgctcacgcacggccacgaggaccacatcggtggtgtcccctacctcctgcgcgagaag
ccggacatccccctcatcggctcgaagctgaccctcgccctcatcgaggccaagcttcag
gagcaccgcatccgcccctacacccttgaggtgaaggaggggcacaccgagaggatcggc
tcgttcgactgcgagttcgtcgccgtcaaccactcgatccccgacgccctggccgtcgcg
atccgcacccccgcgggcatggtcgtgcacaccggcgacttcaagatggaccagctcccg
ctggaccgccgtctgaccgacctccccgccttcgcgcgactcggtgaggaaggcatcgac
cttctgctctccgactccacgaacgcagaggtcccgggcttcgtcccgcccgagcgggac
atctccaacgtcctgcgcacggtgttcgccaacgcccagaagcgcatcatcgtcgccagc
ttcgccagccatgtgcaccgcatccagcagatcctcgatgcggcccatgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgcgagctgggc
tatctgaaggtccccgccggcctggtcgtcgacgtcaaggcgctggacgatcttcccgac
gacgaggtcgtgctggtctgcacgggttcccagggcgagccgatggccgccctctcccgg
atggccaaccgcgatcaccagatcaggatcgtccagggcgacacggtgatcctggcctcg
tccctcatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctcacccgatgg
ggcgcggacgtggtccacaagggcaacgccaaggtccatgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctcatgccggtgcacggc
gaatggcgccatctgcgggccaacgccgagctgggcgccctgaccggcgtacgcaaggac
cggatcgtcatcgccgaggacggcgtggtggtcgacctggtcgacggcgtcgccaagatc
gtcggcaaggtccaggccggctatgtctacgtcgacggcctctcggtcggcgatgtcacc
gaggcccatctcaaggaccgccgcatcctcggcgacgagggcatcatctcggtctatgtc
gtcgtggacagcaccaccggcaagatcgtcggcggcccggacatccacgcccgtggctcg
ggcatcgacgacggcgccttctccggcgtgatgcccaagatcgacgaggccctggccaag
tcggcccaggacggcatcacggagccccaccagctccagcagctggtccgccgcaccgtc
ggcaagtgggtgtcggacaactaccgccgccgcccgatgatcctccccgtggtcgtcgag
gtctga
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