Streptomyces explomaris: SLV14_002489
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Entry
SLV14_002489 CDS
T11122
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sexp Streptomyces explomaris
Pathway
sexp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sexp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLV14_002489 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sexp03021
]
SLV14_002489 (rho)
03019 Messenger RNA biogenesis [BR:
sexp03019
]
SLV14_002489 (rho)
Transcription machinery [BR:
sexp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SLV14_002489 (rho)
Messenger RNA biogenesis [BR:
sexp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SLV14_002489 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
VAD1-2
AAA_25
AAA
NACHT
AAA_22
ResIII
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UYB39935
LinkDB
All DBs
Position
complement(2941316..2943367)
Genome browser
AA seq
683 aa
AA seq
DB search
MSDTTDLMGARTDGSATAPATDAPAAPTRRRRSGTGLDGMVLAELQQVASGLGIKGTARM
RKSQLIEVIKEKQAGGSGSAAKADAPADTETKPKRRTTSKARTGDDSAEPAAGKAAKPAK
GDKAADQAGAQQQIDIPGQPVSDEQPAGERRRRRATAAAGSPEAASGDLKTDTKVEAKTE
VKADAKTDTAVSPQETGEGRPGKGGERQDRGDRQDRGQKGDRGDRGERGQRQRDRDRGDR
RKGGDAGDGGQGGQGGQRQRDRRTDDDDDFEGGRRGRRGRYRDRRGRRGGREDFGNEPQV
SEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPK
DGERREKFNALVRLDTVNSVAPEQGRGRPEFGKLTPLYPQERLRLEGESGGLTTRIIDLV
TPIGKGQRGLIVAPPKTGKTMIMQAIANSITRNNPECHLMVVLVDERPEEVTDMQRSVKG
EVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRIL
SGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVETGSRMDEVIFEEFKGTGNLELKL
DRKLSDKRIFPAVDVDASSTRKEEILMGSDELAIVWKLRRVLHALDQQQAIELLLDKMKQ
TKSNAEFLLQIQKTTPTTGNGND
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcgcgcaccgatggcagtgccaccgcgcccgcc
acggacgctcccgccgcgcctacgcggcgccgccgttccggcaccggccttgacggcatg
gtcctggcagagctgcagcaggtcgcctccggcctcggtatcaagggcaccgcgcggatg
cgcaagagccagctgatcgaggtcatcaaggagaagcaggccggaggctcaggctccgcc
gccaaggccgacgcgcccgccgacaccgagaccaagcccaagcgccggacgacctccaag
gcccgcaccggcgacgacagcgcggagccggccgccggcaaggccgccaagcccgccaag
ggcgacaaggccgcggaccaggccggggcccagcagcagatcgacatccccggtcagccg
gtcagcgacgagcagccggccggtgagcgccgccggcgtcgcgccaccgccgccgcgggc
agcccggaggccgcctcgggcgacctcaagaccgacaccaaggtcgaggcgaagaccgag
gtcaaggcggacgccaagaccgacaccgcggtgtccccgcaggagaccggcgagggccgg
cccggcaagggcggcgagcgccaggaccgcggcgaccgccaggaccgcggccagaagggt
gaccgtggcgaccgcggtgagcggggccagcgccagcgtgaccgtgaccgcggggaccgc
cgcaagggcggcgacgccggcgacggcggccagggcggtcagggcggccagcgccagcgg
gaccgccgtaccgatgacgacgacgacttcgagggcggccgccggggccgtcgcggccgc
taccgcgaccgccggggccgtcgcggcggccgtgaggacttcggcaacgagccgcaggtg
tccgaggacgacgtcctgatcccggtcgcgggcatcctcgacatcctggacaactacgcg
ttcatccggacctcgggctacctgcccggcccgaacgacgtctacgtctcgctcgcccag
gtccgcaagaacggtctgcgcaagggtgaccacgtcaccggtgcggtccgccagcccaag
gacggcgagcggcgcgagaagttcaacgcgctggtccggctcgacacggtcaacagcgtg
gcgcccgaacagggccgcggacggccggagttcgggaagctgacgcccctgtacccgcag
gagcgactgcgcctggagggggagtcgggcggtctgacgacccggatcatcgacctggtc
acgccgatcggcaagggccagcgagggcttatcgtggccccgccgaagaccggcaagacc
atgatcatgcaggcgatcgccaactcgatcacccgcaacaaccccgagtgccacctgatg
gtcgtcctcgtcgacgagcgtccggaagaggtcaccgacatgcagcggtcggtgaagggc
gaggtcatctcctcgaccttcgaccgcccggccgaggaccacaccaccgtcgccgagctg
gccatcgagcgcgccaagcgcctcgtcgagctgggtcacgacgtggtcgtcctgctggac
tcgatcacccgtctgggacgtgcgtacaacctcgccgccccggcctcgggccgcatcctg
tccggtggtgtcgactcgaccgcgctctacccgccgaagcgcttcttcggcgcggcgcgc
aacatcgaggacggcggttcgctgaccatcctggccaccgcgctggtcgagaccggctcg
cggatggacgaggtgatcttcgaggagttcaagggcaccggcaacctggagctcaagctc
gaccgcaagctctcggacaagcgcatcttcccggcggtggacgtggacgcgtccagcacc
cgtaaggaagagatcctcatgggcagcgacgagctcgccatcgtgtggaagctgcgccgg
gtgctgcacgccctggaccagcagcaggccatcgagctgctgctggacaagatgaagcag
acgaagtccaacgcggagttcctgctgcagatccagaagacgacgccgaccacgggcaac
ggcaacgactga
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