Streptomyces explomaris: SLV14_004321
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Entry
SLV14_004321 CDS
T11122
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sexp Streptomyces explomaris
Brite
KEGG Orthology (KO) [BR:
sexp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sexp03019
]
SLV14_004321 (hrpA)
Enzymes [BR:
sexp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SLV14_004321 (hrpA)
Messenger RNA biogenesis [BR:
sexp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SLV14_004321 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
T2SSE
AAA_16
nSTAND_NTPase5
PhoH
NACHT
AAA_25
SLFN-g3_helicase
AAA_30
SRP54
Motif
Other DBs
NCBI-ProteinID:
UYB41560
LinkDB
All DBs
Position
complement(4940023..4944147)
Genome browser
AA seq
1374 aa
AA seq
DB search
MSSQPASALPDGSAPALPGTPAPGLSDLLERLPELMLRDQQRLGRRLDGARRIRKPEARA
AVLSEIAGGIDEAELRVEQRRAAVPEITYPEELPVSQKKDEILAAIRDHQVVIVAGETGS
GKTTQIPKICLELGRGVRGLIGHTQPRRIAARTVAERVAEELKTPLGEAVGWKVRFTDQV
GGDTLVKLMTDGILLAEIQTDRELRQYDTIIIDEAHERSLNIDFILGYLAQLLPRRPDLK
VVITSATIDPERFARHFGSVASVGAAPDRAGSPPAPDASGNDDGTKPTAPVVEVSGRTYP
VEVRYRPLLEEGGQAANNLEGDRDQITAICDAVDELQSAGPGDILVFLSGEREIRDTADA
LNKKALPFTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPGIKYVIDPGMA
RISRYSYRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFLSRPEFTDAEIL
RTNLASVILQMTAAGLGEIEKFPFIDPPDRRNIKDGVDLLSELGALDIKQKDPKKRLTPL
GRKLSQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPADKQQQADQQHARFK
DETSDFLAFLNLWRYVREQQKELSSSAFRRMCRSEFLNYLRIREWQDIYSQLRSVAKTMG
IHLSEQDAAPDPIHTSLLSGLLSHIGIKDTDAKNEYLGARSAKFAVFPGSALFKKPPRWV
MSAELVETSRLWARVNAKIEPEWIEPLAQHLVKRTYSEPHWEQKMAAVMAYERVTLYGVP
IVAQRKITYGRIDPETSRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEELEHRARRRDI
LVDDETLFDFYDQRIPADVVSGAHFDAWWKKKHREEPELLNFEHSMLINESAEAVTKDDY
PDSWRQGKLKFKVTYQFEPGADADGVTVHIPLQVLNQVSSEGFDWQIPGLREQLVTELIR
SLPKPIRRNYVPAPNFAARFLDSTVPLQGALTTSLAAGLQRMVGVPVEAADFDTAKVPDH
LKITFRVVDERRRKLAEAKDLEALRLKLKPKTRAAISKAFEQAAERPARDRRGGGGDGPA
PAGPEQRTGLTSWTIGTLPRTFETRRAGQPLKAYPALVDEGSSVAVRLFDTEAEQLTAMW
AGTRRLILLNIPSNPAKFAQDKLSNQHKLALSRNPHGSIAALFEDCVTAAADRLIAARGG
PAWDEESFRKLFDAVRADLVDVTLKTIQQVQEVLAAWQACERRLKETTFPSLLPSLTDIK
EQLAALIKPGFVTAHGAKRLPDLMRYLVAADRRLQQLPTNAERDRTRMAKVKEMQDEYAW
LLEQFPQGRPVPAAALEIRWMIEELRVSYFAHALGTAYPVSDKRIVKAVDAAAP
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtcagcctgcctccgccctgcccgacggctctgctcccgcgctgcccggcacc
cccgctcccggcctctccgacctgctggaacgtctgcccgagctgatgctgcgcgatcag
cagcggctgggccgccggctcgacggcgcacgccgtatccgtaagcccgaagcccgggcg
gcggtgctctcggagatcgccggcggtatcgacgaggcggagctgcgggtcgagcagcgt
cgcgccgcggtacccgagatcacgtatccggaagagctgccggtcagccagaagaaggac
gagatcctcgccgcgatccgcgaccaccaggtcgtgatcgtcgccggtgagaccgggtcc
ggcaagacgacgcagatccccaagatctgtctggagctgggccggggtgtccggggcctg
atcgggcacacccagccgcgccggatcgcggcccgtacggtcgccgagcgggtggccgag
gagctgaagaccccgctgggcgaggcggtcggctggaaggtccgcttcacggaccaggtc
ggcggggacaccctcgtcaagctgatgacggacggcatcctgctcgccgagatccagacg
gaccgggagctgcgccagtacgacacgatcatcatcgacgaggcacacgagcgcagcctc
aacatcgacttcatcctcggctatctggcccagctgctgccccggcgcccggacctcaag
gtcgtcatcacctcggcgaccatcgacccggagcggttcgcccggcacttcggcagcgtc
gcgtccgtaggggcggcgccggaccgcgccggctccccgcccgccccggacgcctccggg
aacgacgacgggacgaagccgacggctccggtcgtcgaggtctccggccggacctatccg
gtggaggtgcgctaccgcccgctgctggaggagggcggccaggccgcgaacaacctggag
ggcgaccgcgaccagatcaccgcgatctgcgacgccgtggacgagctccagtccgccggg
cccggcgacatcctggtcttcctctccggcgaacgggagatccgcgacaccgcggacgcg
ctcaacaagaaggccctcccgttcaccgaggtcctccccctgtacgcgcggctgtcgcac
gccgagcagcaccgtgtcttccagcggcacacgggcagacggatcgtgctggccacgaac
gtcgccgagacctcgctgaccgtcccgggcatcaagtacgtcatcgacccgggcatggcc
cgtatctcccgctacagctaccgcaccaaggtccagcggctgcccatcgagccggtctcg
caggccagcgccaaccagcgcaagggccgctgcggccgtaccagcgacggcatctgcatc
cgcctctactccgaggacgacttcctctcccgccccgagttcacggacgcggagatcctc
cggacgaatctcgcctccgtcatcctgcagatgaccgcggccggcctcggcgagatcgag
aagttcccgttcatcgacccgccggaccgccgcaacatcaaggacggcgtcgatctgctg
agcgagctcggcgcgctcgacatcaagcagaaggaccccaagaagcggctgaccccgctc
ggccgcaagctctcgcagctgccggtcgacccgcggctggcgcggatggtgctggaggcg
gaccgcaacggctgtgtccgcgaggtcatggtcatcgcggcggccctgtccatccaggac
ccgcgcgagcggcccgcggacaaacagcagcaggccgaccagcagcacgcccgcttcaag
gacgagacctccgacttcctcgccttcctcaacctctggcgctatgtccgcgagcagcag
aaggagctgtcctcctcggccttccgccgaatgtgccgcagcgagttcctgaactatctc
cggatacgtgagtggcaggacatctactcccagctgcgttcggtcgccaagacgatgggc
atccacctcagcgagcaggatgcggcgccggaccccatccacacctccctgctttccggt
ttgctttcgcatatcggcatcaaggacaccgacgccaagaacgagtatctgggcgcccgc
agcgccaagttcgcggtcttccccggctccgcgctcttcaagaagcccccgcgctgggtg
atgtccgccgagctggtcgagacgtcccgcctgtgggcgcgggtgaacgcgaagatcgag
ccggaatggatcgagccgctcgcccagcacctggtcaagcggacatacagcgagccgcac
tgggaacagaagatggccgcggtgatggcgtacgagcgggtgacgctctacggcgtcccg
atcgtcgcccagcgcaagatcacctacggccggatcgatccggagacctcacgcgatctg
ttcatccgtaacgccctggtcgagggcgactggcgcacccaccaccagttcttccatgac
aaccgcaaacttctcggcgaggtcgaggagttggagcaccgcgcccggcgccgcgacatc
ctcgtggacgacgagacgctcttcgacttctacgaccagcgcatccccgcggacgtggtc
tccggcgcgcacttcgacgcctggtggaagaagaagcaccgcgaagagccggagctgctg
aacttcgagcactcgatgctcatcaacgagtccgccgaggccgtcacgaaggacgactac
ccggattcctggcggcagggcaagctgaagttcaaggtcacctaccagttcgagccgggc
gcggacgcggacggtgtgaccgtccacatccccctccaggtcctcaaccaggtctcctcc
gagggcttcgactggcagatcccgggtctgcgcgagcagctggtgacggagctgatccgg
tccctgcccaagccgatccggcgcaactacgtcccggcaccgaacttcgcggcccgcttc
ctggactccacggtcccgctgcagggcgctctgacgacgtctctggccgcggggctgcag
cggatggtgggcgtacccgtggaggccgcggacttcgacacggccaaggtcccggaccac
ctcaagatcaccttccgggtggtcgacgagcggcgccgcaagctcgccgaggccaaggac
ctggaggcgctgcggctgaagctcaagccgaagacccgggcggccatctccaaggccttc
gagcaggccgccgagcggcccgccagggaccgcaggggcggcgggggcgacgggccggcg
ccggccggtccggagcagcgcacgggactgacgtcctggacgatcggcacgctgccgcgc
accttcgagacccggcgtgcgggccagccgctgaaggcctacccggcgctggtcgacgag
ggcagcagcgtcgccgtacgcctcttcgacaccgaggccgagcagctcacggcgatgtgg
gcgggcacccgccggctcatcctgctgaacatcccgtccaatccggccaagttcgcccag
gacaagctgagcaatcagcacaagctcgcgctgtcccgcaatccgcacggctccatcgcg
gcgctcttcgaggactgcgtcaccgccgccgcggaccgtctgatcgcggcccggggcggt
ccggcctgggacgaggagtccttccggaagctgttcgacgcggtccgcgcggacctggtg
gacgtcaccctgaagaccatccagcaggtccaggaggtgctggccgcctggcaggcgtgc
gagcgccggctgaaggagacgacgttcccctcgctgctgccgtcccttacggacatcaag
gagcagctggcggcgctgatcaagccgggcttcgtgacggcgcacggcgccaagcggctg
ccggacctgatgcgctatctggtcgccgccgaccgccgtctgcagcagctgcccaccaac
gccgagcgggaccgcacccgtatggcgaaggtgaaggagatgcaggacgaatacgcctgg
ctgctggagcagttcccacagggccgcccggtgccggccgcggccctggagatccgctgg
atgatcgaggagctccgggtgagctacttcgcccacgctctggggaccgcgtacccggtc
tccgacaagcgcatcgtgaaggcggtggacgccgccgcgccgtag
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