Streptomyces explomaris: SLV14_004379
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Entry
SLV14_004379 CDS
T11122
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sexp Streptomyces explomaris
Brite
KEGG Orthology (KO) [BR:
sexp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sexp03016
]
SLV14_004379
Enzymes [BR:
sexp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SLV14_004379
Transfer RNA biogenesis [BR:
sexp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SLV14_004379
Prokaryotic type
tRNA splicing ligases
SLV14_004379
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UYB41604
LinkDB
All DBs
Position
5010072..5011265
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AA seq
397 aa
AA seq
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MPYVEVPGAQVPIRMWTDPATVEGVAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDPVDPG
RIHGFPTARWDDFWARFDGVADAVKFRQERATKQMGSLGSGNHFIEFCLDDDGVVWLMLH
SGSRNIGKELAEFHMGQAQKLPHNQGLVDRDLAVFIADTPPMAAYRNDLFWAQEYAKHNR
AVMMALFQDVVRKEFRKAKVTFEDVISCHHNYVAEEQYDGLDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRKMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVAKLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgccgtacgtcgaggtaccgggtgcccaggtgccgatccggatgtggacggacccggcc
acggtcgagggcgtcgcgatgcagcagctgcgcaatgtcgccaccctgccgtggatcaag
ggcctggccgtgatgccggacgtccactacggcaagggcgccacggtcggctcggtgatc
gccatgcgcggcgcggtctgcccggcggcggtcggggtcgacatcggctgcggaatgagc
gcggtgcggacctcgctcaccgccaacgacctgcccggtgatctctcccggctgcgctcg
aagatcgagcaggcgattccggtgggccgggggatgcatgacgatccggtggacccggga
cggatccacggtttcccgacggcccggtgggacgacttctgggcgcggttcgacggggtc
gccgacgcggtcaagttccgtcaggagcgggccacgaagcagatggggtcgctcggttcg
ggcaaccacttcatcgagttctgcctcgatgacgacggggtggtgtggctgatgctgcac
tccggctcccggaacatcggcaaggaactggccgagttccacatgggccaggcgcagaag
ctgccgcacaaccagggcctggtcgaccgtgacctcgccgtcttcatcgcggacaccccg
ccgatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgccaagcacaaccgg
gccgtgatgatggcgctcttccaggacgtcgtccgcaaggagttcaggaaggcgaaggtg
accttcgaggacgtgatctcctgccaccacaactatgtggcggaggagcagtacgacggc
ctggacctgctggtgacccgtaagggcgcgatccgggcgggcagcggcgagtacgggatc
atcccgggctcgatgggcaccggctcgtacatcgtcaagggcctgggcaacgccgcgtcc
ttcaactccgcctcccacggcgccggccgcaagatgagccggaacgccgcgaagaagcgg
ttctccacccgggacctggaggagcagacgcggggcgtggagtgccgtaaggactccggt
gtggtggacgagatcccgggtgcctacaagccgatcgagaaggtcatcgaccagcagcgg
gacctggtcgaggtcgtcgcgaagctcaagcaggtcatctgcgtcaagggctga
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