Streptomyces explomaris: SLV14_004524
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Entry
SLV14_004524 CDS
T11122
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sexp Streptomyces explomaris
Pathway
sexp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sexp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SLV14_004524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sexp03021
]
SLV14_004524
03400 DNA repair and recombination proteins [BR:
sexp03400
]
SLV14_004524
Enzymes [BR:
sexp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SLV14_004524
Transcription machinery [BR:
sexp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SLV14_004524
DNA repair and recombination proteins [BR:
sexp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SLV14_004524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
UYB41731
LinkDB
All DBs
Position
5149768..5153667
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEERRTRDLPSLEAHVSVERQQIEQRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLETFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTRNSPKGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVKGE
GRAFGSVAEAIMAFDARELSLQAKVDIRFPIGTVPPRGWTPPVPEEGEPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSAIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAVSDIVVPEAKKAIVAGYEAQDEKVQKQYERGLITKDERTQELINIWTKATNEV
AEAMNENFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIASKD
AAGVLRKADDVESSVYARMLAEDVVVDGKVVAPANVDLGDVLIDALVNAGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
LGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKVVVTPDDGSDEMAYGVSKRARL
LVGEGDHVTVGQPMTVGAVNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVAIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERTKFEGENRRVVAEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccggatcggtctggcaaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtcctacccgggactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtgacccacatctggtacttcaagggcgtgccgagccggctgggctacctgctggacctc
gcgcccaaggacctcgagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gaggagcgtcgtacgcgcgacctgccctcgctggaggcgcatgtctccgtcgagcgtcag
cagatcgagcagcgccgcgactccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggcggacgtccgccgcaaggtgcgcgagggc
gccgagcgtgagatgaagcagctgcgtgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggaccttgagggcgatgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctccatgggtgccgctgcc
ctgcagaagcgcctggagaccttcgacctggacgaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacccgcaacagccccaagggcatggtgctggactgcatcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgcctcaagcgtctccttgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggtcccggtaaccgcccgctgaag
tccctcagcgacatgctgaagggtaagcagggccggttccgtcagaacctgctcggtaag
cgagtcgactactcggcgcgttccgtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagagcgcgaagcgcatggtcgagcgcggccgc
acggtcgtctacgacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccattcagattcacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctcccgctgtccgcggaggcccaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgctcggcctcttcttcctcaccacggatgaagaggagcgcgaggtcaagggtgag
ggccgggccttcggctcggtcgccgaggccatcatggccttcgacgcccgtgagctctcg
ctgcaggcgaaggtcgacatccgcttcccgatcggcaccgtcccgccccgcggctggacc
ccgccggttccggaggagggcgagcccgagtggcagcagggtgacagcttccggctgcgg
acgaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgcgatcgtcaacgacctggccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggtttccactgggcgacc
cgttccggcgtcaccgtcgccgtctcggacatcgtcgtgccggaggccaagaaggccatc
gtcgcgggctacgaggcccaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcactcaggaactgatcaacatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgagaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcggcagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgtccgatcaaggcgtcgttccgcgagggtctgtcc
gtgctcgagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctt
cgtaccgccgactccggttacctcacccgtcgtctggtcgacgtctcccaggacgtcatc
attcgcgaggaggactgcggcacggagcgcggcctcaagctgcggatcgcctcgaaggac
gccgccggtgtcctgcgcaaggcggacgacgtcgagtccagcgtctacgcacgcatgctg
gccgaggatgtcgtcgtcgacggcaaggtcgtcgccccggcgaacgtcgacctcggtgac
gtgctcatcgacgcgctggttaacgcgggcgtcgaggaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggccgttcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
ctgggtctgccgcgtgtcgtcgagctcttcgaggcccgtacgcccaagggcgtcgccccg
atctcggaggcggccggccgcgtccggatcgaggagaccgagaagaccaagaaggtcgtc
gtcaccccggacgacggcagcgacgagatggcctacggcgtctccaagcgtgcccgtctc
ctggtgggcgagggcgaccacgtcacggtcggccagccgatgaccgtgggtgccgtgaac
ccgcacgacgtgctgcggatcctcggccagcgtgccgtccaggtccacctggtcggcgag
gtccagaaggtctacaacagccagggcgtggcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgtgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctggtggagcgcacgaagttcgagggcgagaaccgtcgggtcgtggcggaaggc
ggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcttcgctggccacc
gagtcgtggctgtcggcggcgtccttccaggagacgaccagggtcctgaccgacgcggcg
atcaacgccaagtcggactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgctaccgcaacatccgggtcgagcccaccgaggaa
gccaaggccgcgatgtactcggccgtcggttacgacgacatcgactactcgcccttcggc
accggctccggccaggcggtcccgctggaggactacgactacggtccgtacaaccagtaa
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integrated database retrieval system
