Streptomyces explomaris: SLV14_005313
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Entry
SLV14_005313 CDS
T11122
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sexp Streptomyces explomaris
Pathway
sexp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sexp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLV14_005313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sexp03019
]
SLV14_005313
03009 Ribosome biogenesis [BR:
sexp03009
]
SLV14_005313
Enzymes [BR:
sexp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SLV14_005313
Messenger RNA biogenesis [BR:
sexp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SLV14_005313
Ribosome biogenesis [BR:
sexp03009
]
Prokaryotic type
rRNA processing factors
SLV14_005313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
Motif
Other DBs
NCBI-ProteinID:
UYB42442
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All DBs
Position
6084638..6088447
Genome browser
AA seq
1269 aa
AA seq
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MLEPIEPTRSTNSQDRGADDNHSPSDTLPPRRRRRAASRPAGPPAAGAAAEAAVVSTEAT
ASSAADPALDEETTASAVTTGDEAKPARTRRRATRKVTSPAGAPQSAADEPDAAPAAEAE
TAEAETAEAETEQAPAAAVETPAEASQDEEAAPRRTRRRATRKVTAPAGTPQTEAAPEPV
VAEAPAPVAQPVEAAADVAPAAAEESEEAAPRRTRRRATRKVTAPAGAPQASAADEAAPA
ESAPAAPVAEEAAPAPAEDAKPARTRRRATRKTTAPSDAPQAAQEAEEPAAAEPQQAPAA
EAQTAEAPRRRARRRGERAAEPAAEAPRTEEEPATEAPQRGRRRAQRPPTAVFQAPVFTE
PMFQTPETAAAAAAAARQEETTAEPVAEEQPAAGSRRRRRRGAPAEPEQVTAAPAEEPAA
EEAAAAAEPEAEQAESGNGEDESADRPSRRRRRGGRRRRRGESAEGADEQAADEREAPEA
EAEETEEQGQPEEQEDEEPSGGGSSSSRRRRRRRRRTGEAAEVEAGSADDPERTVVKVRE
PRKKDEGTSADEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMV
VRQSGERTQIGVLEDDVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNA
VLYAGEVNFEALGMANGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVY
VPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVIVRTAAEGASEEELARDVQRLQAQW
EEIQKKAKSSSSSAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVAHVAP
DLVDRLQKWTSDVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFT
GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGR
DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSESCVHCNGRGVIVHMDQPAAVGGGGKRK
KKGKGAQPEPHVHEAEVVEPTPDGAEPELEPVPVTEAELQPAVAEADEWFSSPAEAEAAA
GRGRGRRRVSRKVSAPAGAPKAATEATEIVVPAEPVAAPEPEPAPEPVADAPAAEPAPSR
PRRRVTRKVTAPQVSDDSAATVVIAAPAETVSEPAPAESAEPVEGAEAEAEPAAKKTAKK
ATAKKAAAKKTTAKKTTAKKTAAKKTTTAKKATAKKTTAKKTTTKKAAAKKTAAAEQPSV
ASVSSSAED
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcccattgagcccacccgatccacgaattcccaggatcgcggtgctgacgac
aaccactcacccagtgacacgctgccgccgcgccgacggcgccgcgcggcatcccggccg
gccggtccgccggcggccggtgccgccgccgaagccgcggtggtgagcaccgaggccacc
gcctcttccgcggccgatccggccctcgacgaggagaccaccgcatccgcggtgaccacc
ggtgacgaggccaagccggcccgtacccgccgccgtgcgacccgcaaggtcacctccccg
gcgggcgccccgcagtcggctgccgacgagccggacgcggcaccggccgccgaggccgag
accgccgaggccgagaccgccgaggccgagaccgagcaggccccggccgccgccgttgag
acgcccgccgaggcgtcgcaggacgaggaggcggcaccgcgccgcacccgccgccgggcg
acccgcaaggtgaccgcccccgccggcaccccgcagaccgaggccgccccggagccggtg
gtcgccgaggcgcctgcgcctgttgcgcagcccgtcgaggccgccgcggacgtcgctccg
gccgccgccgaggagagcgaggaggcggcaccgcgccgcacccgccgccgggccacccgt
aaggtcaccgctccggccggcgccccgcaggcgagcgccgccgacgaggccgccccggcc
gagagcgccccggccgcccccgtcgccgaggaagcggcccccgcgcccgccgaggacgcc
aagcccgcccggacgcgtcgccgcgccacccgtaagaccaccgccccctcggacgcgccg
caggccgcccaggaggccgaggagcccgcggcagcggagccccagcaggcaccggccgcc
gaggcccagaccgccgaggcgccccgccgccgggcgcgccgccgcggtgagcgtgccgcg
gagccggccgccgaggcgccccgcaccgaggaggagcccgccacggaggcgccgcagcgc
ggccgtcgccgtgcgcagcggcccccgaccgccgtcttccaggcgccggtcttcaccgag
ccgatgttccagacgccggagaccgcggccgccgccgctgccgcggcccgccaggaggag
accaccgccgagccggtcgcggaggagcagcccgccgcgggttcgcgccgccgtcgccgc
cgtggcgccccggccgagcccgagcaggtcaccgccgccccggccgaggagccggcggcc
gaagaagccgccgcggcggccgagccggaggccgagcaggccgagagcggcaacggtgag
gacgagtcggccgaccgcccctcgcgccgccgccgccgtggtggccgccgccgtcgtcgc
ggtgagtccgccgagggtgccgacgagcaggccgccgacgagcgggaggccccggaggcg
gaggccgaggagaccgaggagcaggggcagccggaggagcaggaggacgaggagccgtcg
ggcggcgggtccagcagcagccgccgtcgccgtcgccgccgccgtcgtaccggtgaggcc
gccgaggtcgaggccggcagcgccgacgacccggagcgcacggtcgtcaaggtccgtgag
ccccgcaagaaggacgagggcaccagcgccgacgaggtgcagtcgatcaaggggtcgacg
cgtctggaggccaagaagcagcgccgccgtgagggccgcgagcagggccgccgccgggtg
ccgatcatcaccgaggcggagttcctggcccgccgcgaggccgtcgagcgggtgatggtc
gtccgccagagcggcgagcgcacccagatcggcgtccttgaggacgacgtgctcgtcgag
cacttcgtcaacaaggagcaggcgacctcgtacgtcggcaatgtctacctcggcaaggtg
cagaacgtcctgccgtcgatggaggccgcgttcgtcgacatcggcaagggccgtaacgcc
gtgctgtacgccggtgaggtcaacttcgaggcgctgggcatggccaacggcccgcgccgg
atcgagaccgcgctgaagtccggccagtccgtgctggtgcaggtcaccaaggacccgatc
ggtcacaagggcgcccggctcaccagccaggtctcgctccccggccgctacctggtgtac
gtgcccgagggctcgatgaccggtatcagccgcaagctccccgacaccgagcgggcgcgg
ctgaagcagatcctcaagaagatcgttcccgaggacgcgggcgtcatcgtgcgtaccgcg
gcggagggcgcgagcgaggaggagctggcgcgcgacgtccagcggctgcaggcccagtgg
gaagagatccagaagaaggccaagagcagcagctccagcgcgccgaccctgctctacggc
gagccggacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttctccaaggtc
atcgtcagcggtgacgacgcctgggagaccatccacggctatgtcgcgcatgtcgccccg
gacctcgtcgaccggctccagaagtggacctcggacgtcgacgtcttcgcgacgtaccgc
atcgacgagcagctgatgaaggcgctggaccgcaaggtctggctgcccagcggcggttcg
ctggtgatcgaccggaccgaggcgatggtcgtggtcgacgtcaacaccggaaagttcacc
ggccagggcggcaacctggaggagacggtcaccaggaacaacctggaggcggccgaggag
atcgtgcgccagctgcggctgcgcgacctcggcggcatcatcgtgatcgacttcatcgac
atggtgctggagtccaaccgggacctggtgctgcggcgcctgctggagtgcctgggccgg
gaccggaccaagcaccaggtcgccgaggtcacctcgctcggcctggtccagatgacccgt
aagcgggtcggccagggcctgctggagtccttctccgagtcgtgtgtgcactgcaacggc
cgtggcgtcatcgtccacatggaccagccggcggcggtcggcggcggtggcaagcgcaag
aagaagggcaagggcgcccagcccgagccgcatgtccacgaggccgaggtcgtcgagccg
accccggacggtgccgagccggagctggagcccgtccccgtgacggaggccgagctgcag
cccgcggttgccgaggccgacgagtggttcagcagcccggccgaggccgaggcggccgcc
gggcgtggccgtggccgccgccgggtgagccggaaggtgtccgctccggcgggcgccccc
aaggcggccacggaggccaccgagatcgtcgtgccggccgagccggtcgcggcgcccgag
ccggagcccgctccggagccggtcgccgacgcgccggccgccgagcccgcgccgagccgt
ccgcgccgtcgggtcacccgtaaggtgaccgccccgcaggtctccgacgactccgcggcg
accgttgtgatcgccgccccggcggagacggtcagcgagccggcgccggccgagtccgcg
gagcccgtcgagggcgccgaggcggaggcggagcccgcggccaagaagaccgcgaagaag
gcgacggcgaagaaggcggcggccaagaagaccaccgcgaagaagaccacggccaagaag
acggcggcgaagaagaccaccaccgccaagaaggccacggcgaagaagaccaccgcgaag
aagacgacgacgaagaaggcggcggccaagaagaccgctgccgccgagcagccctcggtg
gcgtcggtgtcctcctccgcggaggactga
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