Streptomyces explomaris: SLV14_007622
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Entry
SLV14_007622 CDS
T11122
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sexp Streptomyces explomaris
Pathway
sexp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sexp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLV14_007622 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sexp03021
]
SLV14_007622 (rho)
03019 Messenger RNA biogenesis [BR:
sexp03019
]
SLV14_007622 (rho)
Transcription machinery [BR:
sexp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SLV14_007622 (rho)
Messenger RNA biogenesis [BR:
sexp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SLV14_007622 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
NACHT
AAA_22
ATPase_2
Spore_III_AA
AAA
AAA_28
Motif
Other DBs
NCBI-ProteinID:
UYB44525
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Position
8762164..8763360
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AA seq
398 aa
AA seq
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MTSSTHLSTPTTAASRTVAPPAGASSTSPVVTAAGVLDTVNGRQESGFLRVEGCRASSRD
VRVPAALIRAAGLRTGDFVVGVCERPRSLARIETVNGHRPGAVRGRPHFRDLTPLHPRHR
LRLESATGGPAPRIVDLLAPVGKGQRGLIVAPPKTGKTVLLQQLAAAVAENHPECRLMVV
LIDERPEEVTEMRRSVRGEVLASTFDRPAREHIALAELAVERAKRLVEHGQDVVILLDSL
TRLCRAHNNAAASGGRTLSGGVDAAALQGPKRLFGAARLAEEGGSLTLLATALVETGSRA
DDYFFEELKSTGNMELRLDRVLADKRVYPAVNAAASGTRREELMLPPAELTATRRLRRAL
QTGDGQANMQSLLEKVRRTPDNATLLRQLRLQHTVPGA
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtgaccagtagcacccacctcagcacccccaccaccgccgcttcccgcaccgtcgcaccg
cccgccggcgcgtcctcgacatcacctgtcgtcacggctgccggggtcctggacacggtg
aacggacggcaggaatccggatttctccgcgtggagggctgccgtgcctcgtcccgcgac
gtccgggtgcccgccgccctgatccgtgcggccggcctgcgcaccggcgatttcgtcgta
ggggtctgcgaacgcccgcggtcgctcgcccggatcgaaacggtcaacgggcaccggccg
ggcgccgtgcgcggccggccgcacttccgggacctcacaccgctgcaccctcggcaccgc
ctacgcctggaaagcgccacaggcggaccggccccgcgcatcgtcgacctgctggctccg
gtcggcaagggacagcgagggctcatcgtggcaccgccgaagacggggaagaccgtgctg
ctgcagcaactcgcggccgccgtcgccgagaaccaccccgaatgccggctgatggtcgtg
ctgatcgacgaacggccggaagaagtcaccgagatgcgtcgttcggtgcgcggcgaggtg
ctcgcctccaccttcgaccgtccggccagggaacacatcgccctcgccgaactggccgtg
gagcgcgccaaacgactcgtcgagcacgggcaggacgtcgtcatcctccttgattccctc
acccggctgtgccgggcccacaacaacgccgccgcgtccggcggccgcacgctgagcgga
ggcgtcgacgccgccgcgctgcagggccccaaacggctcttcggcgcggcacggctcgcc
gaggagggcggttcgctcacccttctcgccaccgccctggtggagaccggctcccgtgcc
gacgactacttcttcgaggaattgaagagcaccggaaacatggaactccgtctcgaccgg
gtactcgcggacaagcgcgtctatccggcggtcaatgccgccgcctccggcacacgccgg
gaggaactgatgctcccaccggccgagttgacggccacgcgtcgactgcgccgcgccctc
cagaccggggacggccaggcgaacatgcagtccctgctggagaaggtccggcgtacgccc
gacaacgcgacgctcctgcggcagctgcggctgcagcacaccgtcccaggcgcatga
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