Salmonella enterica subsp. enterica serovar Typhimurium SL1344: SL1344_1122
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Entry
SL1344_1122 CDS
T01724
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sey
Salmonella enterica subsp. enterica serovar Typhimurium SL1344
Pathway
sey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SL1344_1122 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sey03019
]
SL1344_1122 (rne)
03009 Ribosome biogenesis [BR:
sey03009
]
SL1344_1122 (rne)
Enzymes [BR:
sey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SL1344_1122 (rne)
Messenger RNA biogenesis [BR:
sey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SL1344_1122 (rne)
Ribosome biogenesis [BR:
sey03009
]
Prokaryotic type
rRNA processing factors
SL1344_1122 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CBW17218
UniProt:
A0A0H3NAM6
LinkDB
All DBs
Position
complement(1224496..1227699)
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AA seq
1067 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPA
PTPVEPAVSVATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAE
RQQDRRKPRQNNRRDRNERRDTRDNRAGRDGGESRDDNRRNRRQTQQQNAEARDTRQQET
AEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRK
QRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADIAPEQ
DDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKV
WIRYPIVRPQETQVVDEQREADLALPQPVVAEQQVIAATAALEPQASVQAVENVAVEPQT
VAEPQAPEVVEVETTHPEVIAAPVDEQPQLIAESDTPVAQEVIADAEPVAETADASITVA
ENVADVVVVEPEEETKAEAAVVEHTAEETVIAPAQVVEKSQDVVCVDDHNHASAPMTRAP
APEYVPETPHHSDWQRPSFHFEGKGAAGGHSATRHASAPATRPQPVE
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcgactcagcaggaagagttgcgcgtcgcccttgtagat
gggcagcgtctgtacgatctggatatagaaagccccggacacgagcagaaaaaagcgaac
atctataaaggcaaaattacccgtattgaaccgagcctggaagcggcttttgttgattac
ggcgcagaacgccacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aactacagcgctcatggtcgcccgaacattaaagacgtgttacgcgaaggccaggaagtc
attgttcaaatcgataaagaagagcgcggcaacaaaggcgcggcgttaaccacctttatc
agtctggcgggcagctacctggtactgatgccgaataacccgcgcgcgggtggtatttcc
cgtcgcattgaaggcgacgatcgtaccgagttaaaagaagcgttggccagcctggaactt
cctgaagggatggggcttatcgtgcgtaccgcgggcgtgggtaaatccgccgaagcgttg
cagtgggatttaagcttccgcctgaaacactgggaggccattcagaaagccgctgaaagc
cgtcccgcgccgttcctgatccatcaggaaagcaacgtcatcgtacgcgcgtttcgcgac
tatctgcgtcaggatatcggtgaaatcctgatcgacaatccaaaagtgatggaaatggcg
cgtcagcatatcgccgcgttgggccgcccggattttagcagcaaaattaagctgtacacc
ggtgaaatcccgttgttcagccattaccagatcgaatcgcagatcgagtcagcgttccag
cgtgaagtgcgcctgccctccggcggctccatcgtcattgacagtaccgaagcgttaacc
gccatcgatatcaactccgcccgcgcgactcgcggcggcgatatcgaagaaacggcgttt
aataccaacctggaagcggccgatgagattgcccgccagttgcgtctgcgcgacctgggc
ggcctgatcgttatcgactttatcgatatgacgccggtacgtcaccagcgcgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgggcgcgtattcagattagccatatttcc
cgcttcggcctgctcgaaatgtcgcgtcagcgcctgagcccgtctctgggcgaatccagc
catcacgtgtgtccgcgctgtagcggtaccggcaccgtgcgcgataacgaatctctgtcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaagagaatacgcaggaagtccat
gccattgttccggtgccgatcgcctcttatctgcttaacgaaaaacggacggcagtgaac
gctattgagacgcgtcaggatggcgtccgctgtgtcatcgtcccgaacgatcagatggaa
acgccgcactattccgtgctgcgcgtacgcaaaggggaagaaacgccgaccctgagctac
atgctgccgaagctgcacgaagaagcgatggcgctgccttctgaagaagagtacgccgag
cgtaaacgcccggagcagcctgcgctggcgacattcgctatgccagatgtgcctccggcg
ccgacgcctgtcgaaccggcggttagcgtcgccacggcgaaaaaggataatgttgccgcc
gcgcagcctgcccagccgggtctgtttagccgcttccttaacgcgctgaaacaactgttc
agcggtgaagaaacgaaaaccgtcgaaacagccgcgccgaaagcggaagaaaaagcggag
cgtcagcaggatcgtcgcaagccacggcagaacaaccgtcgcgatcgtaacgaacgccgc
gacacccgtgataaccgtgccggacgtgacggcggcgagagccgcgacgataatcgtcgt
aaccgtcgccagacgcagcagcaaaatgcggaagcgcgcgatacccgccagcaggaaacg
gcggaaaaagtgaaaaccggcgatgaacagcaacagacgccgcgtcgcgaacgcagccgc
cgccgcaatgatgacaagcgccaggcgcagcaggaagtaaaagcgcttaaccgcgaagaa
caacctgtccaggagaccgagcaggaagaacgcgttcagcaggttcagccgcgccgcaag
cagcgccagcttaatcagaaagtccgctttaccaacagcgcagtggttgaaacggttgac
acgccggtcgtcgtcgacgaaccgcgcccggttgaaaacgttgaacagcccgttccagcg
ccgcgtaccgagctggcgaaagttgatttacctgtcgtcgccgatatcgcgccagagcag
gatgatagcgtagaacctcgcgataataccggtatgccgcgtcgctcccgccgttctccg
cgccacctgcgcgtaagcggtcagcgtcgccgtcgctatcgtgacgagcgctacccgaca
caatcgccaatgccgttaaccgtcgcctgcgcgtcgccagaaatggcgtccggtaaagtc
tggatccgctacccgattgtccgtcctcaggaaacgcaggttgttgacgagcagcgtgaa
gcagatctggcgctgccacaaccggttgtcgctgaacagcaggttatcgctgcgaccgca
gcgctcgaaccacaagcgtcggtacaggcagtagaaaacgttgccgttgagccgcagacc
gtcgccgaaccacaggcgccggaagtcgtcgaggtcgagacaacgcatccggaagtgatt
gccgcgccagttgatgaacagccgcaactgattgccgaaagcgatacgccggtggcgcaa
gaggttattgctgacgccgaaccggtagcagaaaccgccgacgcgtccattacggtggct
gaaaacgtagctgatgttgtcgttgtcgagccagaagaagagacaaaagcggaagcggct
gttgtggagcacacggcagaagaaaccgttatcgcaccggcccaggtggtggaaaagtcg
caggacgttgtctgcgttgacgatcataatcacgccagcgcgccgatgacgcgtgcgcca
gcgccggaatatgtgccggaaaccccgcaccatagcgactggcagcggccttccttccac
tttgaaggtaaaggcgcggcaggcggacacagcgccacacgtcacgccagcgccccggcg
acacgcccacagccggtagaatga
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