KEGG   Salmonella enterica subsp. enterica serovar Typhimurium SL1344: SL1344_1138
Entry
SL1344_1138       CDS       T01724                                 
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
sey  Salmonella enterica subsp. enterica serovar Typhimurium SL1344
Pathway
sey03030  DNA replication
sey03430  Mismatch repair
sey03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sey00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SL1344_1138 (holB)
   03430 Mismatch repair
    SL1344_1138 (holB)
   03440 Homologous recombination
    SL1344_1138 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sey03032]
    SL1344_1138 (holB)
   03400 DNA repair and recombination proteins [BR:sey03400]
    SL1344_1138 (holB)
Enzymes [BR:sey01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SL1344_1138 (holB)
DNA replication proteins [BR:sey03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SL1344_1138 (holB)
DNA repair and recombination proteins [BR:sey03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SL1344_1138 (holB)
SSDB
Motif
Pfam: DNA_pol3_delta2 DNApol3-delta_C HolB_lid EPF DUF6869
Other DBs
NCBI-ProteinID: CBW17234
UniProt: A0A0H3NK95
LinkDB
Position
1240404..1241408
AA seq 334 aa
MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCG
HCRGCQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKLYEHSRLGGAKVVWIADAALL
TDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRCRLHHLAPPSESYAMSWLSREV
TASQEALLTALRLNAGSPGAALALLQSERWAQREALCQALMDSLHTGDWYAVLTALNHEQ
APARLHWLATLLVDALKRQHGASYLTNVDADAVVAALAGPLSPARIQAILNDVCHCRDQL
LHVTGLNRELVLTDLILRIEHYLQPGTLLPVPHL
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgaaatggtatccatggttacggcccgcctatgaaaaactggtagaaagttaccaggcg
ggacgtgggcaccatgcgctactgattcaggccttacctggcatgggcgacgaggcgctg
tgctatgcgctgagccgttatctgttatgccagcagcctgagggccacaaaagctgtggg
cattgccgtggctgtcagcttatgcaggctggcacgcatccggactattacacgctgacg
ccggataaaggcaaaagcagcctcggcgtagatgcggtacgcgaggtcagcgagaaattg
tacgagcactcccgtctgggcggcgcgaaggtggtgtggattgcggatgcggcgctatta
accgacgccgccgccaatgcgttgctcaaaacgctggaagagccgccggagcaaacctgg
tttttccttgccagcccggagcctgctcgtctgttggcgacattacgcagccgctgccgg
ctgcatcatctggcgccgccgtccgaatcgtatgcgatgtcatggctgtcgcgagaagtg
acggcgtcacaagaagcattgctcacggcgctacgtctgaatgcggggtcgcccggcgcc
gcgctggcgctgttgcagtctgaacgctgggcgcagcgtgaggcgctgtgtcaggcgtta
atggacagtttgcatacgggcgactggtatgcggtattaacggcgctcaatcatgagcaa
gccccggcgcgcctgcactggctggcgacgctgctggtagacgcgctgaaacgtcagcac
ggcgcgtcgtacctgacaaacgttgatgcggacgcggttgttgccgcgctggcggggccg
ctatccccggcgcgtattcaggcaatcctgaacgatgtttgccattgtcgtgatcaatta
cttcatgtgaccggattaaaccgcgaactggtattaaccgatctcattctccgcatcgag
cattacctgcaaccaggcaccttgttgcctgttcctcatctttga

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