Streptococcus equi subsp. zooepidemicus MGCS10565: Sez_0109
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Entry
Sez_0109 CDS
T00746
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sez
Streptococcus equi subsp. zooepidemicus MGCS10565
Pathway
sez03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sez00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sez_0109 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sez03021
]
Sez_0109 (rpoC)
03400 DNA repair and recombination proteins [BR:
sez03400
]
Sez_0109 (rpoC)
Enzymes [BR:
sez01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sez_0109 (rpoC)
Transcription machinery [BR:
sez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sez_0109 (rpoC)
DNA repair and recombination proteins [BR:
sez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sez_0109 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
CM_2
Motif
Other DBs
NCBI-ProteinID:
ACG61491
UniProt:
B4U048
LinkDB
All DBs
Position
118236..121844
Genome browser
AA seq
1202 aa
AA seq
DB search
MQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWECACGKYKRIR
YKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDMSPRALEEVI
YFAAYVVIDPKDTPLEPKSLLTEREYREKIQEYGHGSFIAKMGAEAIQDLLKRVDLATEI
AELKEELKTATGQKRIKAVRRLDVLDAFNKSGNKPEWMILNILPVIPPDLRPMVQLDGGR
FAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNGRRGRPITGP
GSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKP
FVMREIVAREFAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEP
VLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHILNPKDGKPV
VTPSQDMVLGNYYLTMEDAGREGEGMIFKDKDEAVMAYRNGYVHLHSRVGIAVDSMPSKP
WKDSQRHKIMVTTVGKILFNDIMPEDLPYLQEPNNANLTEGTPDKYFLEPGQNIQEVIDS
LPLNVPFKKKNLGNIIAETFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVGIADIPVIDN
KAEIIEAAHHRVEEINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIETQDPKNPIVM
MMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMT
DTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETLEERLQGRYT
RKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSVFTCATRHGVCRHCYGINLA
TGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQEIFEARNPKG
EAVITEVKGTVIEIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVEVGDEVNRGAALTE
GSIQPKHLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDT
DLLPGTLMDIADFTDANKEIVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVL
TDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNIEPQAINEVEVIEGAEATEEPAII
EE
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcacattagcttcaccaagtaaggtccgttcatggtcctatggtgaagttaaa
aaacctgaaacaatcaactaccgtacattaaaaccagaacgtgagggtctttttgacgaa
gtcatttttggaccaaccaaggattgggagtgtgcgtgtggcaaatataaacgtattcgc
tataagggcattgtctgtgaccgttgtggggtcgaggtaacgcgtgcaaaggttcgtcgt
gaacgcatgggacacattgagctgaaggcacctgtctcacatatctggtattttaagggt
atcccatctcgcatgggcttgactcttgatatgagtccgcgtgcccttgaggaggtaatc
tactttgccgcttatgtggttattgatccaaaggacacaccgcttgagccaaaatcacta
ttgacagagcgtgaatatcgtgaaaaaatccaagaatatggacatggctcattcattgct
aagatgggggcagaggccattcaagacctcttaaagcgtgttgatttggcaacagaaatt
gctgagctaaaggaagaattaaaaactgcaacaggtcaaaagcgtatcaaggctgttcgt
cgtttagatgtgcttgatgcctttaataaatcaggcaataagccagaatggatgatcctg
aacatcttgccggtcattccaccagatcttcgtcctatggtgcaattggacggtggtcgc
tttgcagcctcagacttgaatgacctttaccgtcgtgtcattaatcgtaataaccgttta
gcacgtttgctggagcttaatgcgcctggtatcattgtgcaaaatgaaaagcgtatgctg
caagaggcggttgatgctttgattgataatggtcgtcgtggtcgtcctattacaggacct
ggtagtcgtccgctgaagtccttgagccacatgcttaaaggaaaacaagggcgttttcgt
caaaacctgcttggtaagcgtgttgacttctcaggtcgttcagttattgctgtaggtcca
acgcttaaaatgtatcaatgtggtgtgccacgtgagatggctattgagcttttcaagcca
tttgtgatgcgtgagattgttgcacgcgaatttgccggcaatgtcaaagcagctaagcgt
atggttgagcgtggcgacgagcgcatttgggatattctagaagaggtcatcaaggagcac
ccagtgcttcttaaccgcgcacctactcttcacaggcttggtattcaggcctttgagcca
gttcttattgatggtaaggctcttcgtcttcacccacttgtgtgtgaggcctacaatgcc
gactttgacggagaccaaatggccattcacgtgccgctgtcagaggaagcacaggcagaa
gctcgtcttttaatgcttgctgccgagcatattcttaaccctaaggacggcaagccagtt
gtaacaccttctcaggatatggtgctaggaaactactatctgacaatggaagatgctggt
cgtgaaggcgaaggtatgatctttaaggacaaggatgaagcggtaatggcttatcgtaat
ggctatgttcaccttcatagtcgtgttggtatcgctgttgacagcatgccaagcaagcct
tggaaggatagtcaaagacacaaaatcatggtgacaacagtcggtaagattttgtttaat
gacatcatgccagaggaccttccttacctccaagagccaaataatgctaacctgacagag
ggcactccagataaatacttcttggagccaggtcagaatattcaggaggttattgatagc
ttaccgctcaatgtgccattcaagaagaaaaatcttggtaacatcattgcggaaaccttc
aagcgtttccgtacaacagaaacatcggcctttcttgaccgcttgaaggaccttggctac
tatcattcaacccttgcgggcttgacggttgggatcgctgatattccggttattgacaac
aaggctgagatcatcgaggctgctcaccatcgtgttgaggagattaataaggccttccgt
cgaggcttgatgactgatgatgatcgctatgttgcagtcacaacaacatggcgcgaggca
aaagaagcccttgagaagcgtctgattgaaacacaggatcctaagaacccaatcgttatg
atgatggactcaggagcgcgtggtaacatctctaacttctcgcagcttgccggtatgcgt
ggcttgatggctgctcctaatggccgtattatggagcttcctatcctgtctaacttccgc
gaaggcttgtctgttttggaaatgttcttctcaactcatggtgctcgtaaaggtatgact
gatacggctcttaagacagctgactcaggctatctgacacgtcgtttagttgatgttgcg
caagatgtcatcattcgtgaggacgattgtggtacagaccgaggccttcttattcgagct
atcacagatggcaaggaagtcactgaaacacttgaggagcgcttgcagggtcgatacact
cgtaaatcagtcaagcaccctgagactggtgaagtattgattggtgctgaccaattaatc
actgaggacatggctcgcaagattgttgatgctggtgttgaagaggttaccattcgctca
gtatttacctgtgctactcgtcatggagtgtgtcgtcactgttacggtatcaacctagcg
acaggtgatgcggttgaggttggtgaggctgttggtactatcgctgcccaatctatcggt
gagcctggtactcagctgaccatgcgtaccttccacacaggaggggttgcctctaatacc
gatatcacacagggtcttcctcgtatccaagaaatctttgaagctcgcaaccctaaaggg
gaagcagttatcacagaggttaagggtactgttattgagattgaagaggacgcatcaact
cgtactaagaaagtctacgttcaaggtaaaacaggcatgggtgaatatgtcgtgccattt
acagcgcgtatgaaggttgaggttggtgatgaggtcaatcgtggagctgcccttacagaa
gggtcaatccagcctaagcacctccttgaggttcgtgataccttgtcagttgagacctac
ttgcttgctgaggttcaaaaggtttaccgcagccaaggggtagaaatcggagacaagcac
gttgaggtgatggttcgtcaaatgcttcgcaaggtacgtgtcatggatccaggtgataca
gatcttctgccaggaaccttgatggacattgcagacttcacagatgccaacaaggagatt
gttatctccggaggtattcctgcgacctctcgtccagtgcttatgggaatcacaaaggcc
tcacttgagactaattcattcttgtcagcagcttccttccaggaaactactcgcgtgctg
acagacgctgctatccgaggcaaaaaagaccatctattggggcttaaggaaaatgttatc
atcggtaagatcattccggcaggtactggtatggctcgttaccgtaacattgaaccacaa
gctatcaatgaggtcgaggttatcgaaggagctgaagctacagaagagccagcaattatt
gaggaataa
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