Streptococcus equi subsp. zooepidemicus MGCS10565: Sez_1418
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Entry
Sez_1418 CDS
T00746
Symbol
rnr
Name
(GenBank) ribonuclease R Rnr
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sez
Streptococcus equi subsp. zooepidemicus MGCS10565
Pathway
sez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sez_1418 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sez03019
]
Sez_1418 (rnr)
03016 Transfer RNA biogenesis [BR:
sez03016
]
Sez_1418 (rnr)
Enzymes [BR:
sez01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sez_1418 (rnr)
Messenger RNA biogenesis [BR:
sez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sez_1418 (rnr)
Transfer RNA biogenesis [BR:
sez03016
]
Prokaryotic type
tRNA degradation factors
Sez_1418 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
RNase_II_C_S1
OB_HELZ2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ACG62752
UniProt:
B4U435
LinkDB
All DBs
Position
complement(1454953..1457277)
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AA seq
774 aa
AA seq
DB search
MMIENITNYLKEHGQSNIHDLAAALEMTGAKTFPDLIKAISKMESKGLLSFSDEGEVFLR
ASQQKKPEIRIQGIFRANKAGFGFLSVDDSEDDMFIGRDDVGYAIDGDRVLAVIKKPANR
LKATAAEARVVAIVDRSLKTAVGHIVLEANNPKYAGYIKSKNQKIQQRIYITKSPVALDG
TEIIKADIVQYPKAGQDYFVGSLRDIVGHQDDVGMDVLEVLESMDIVSAFPDDVLAEANA
IPDAPSDQDLMGRVDLRKETTITIDGADAKDLDDAIHIKKLANGNFELGVHIADVSYYVT
EGSALDREAAARGTSVYVTDRVVPMLPERLSNGICSLNPAVDRLTQSAIMEIDHQGHVVD
YQLCQSVINTTFRMTYSAVNQMIAGDKEALQQFASIADDVSTMVELHQILEAMRVKRGAL
NFDTQEAKILVNDKGMPVDVVLRQRGVAERMIESFMLAANECVAEHFSRAGLPFIYRVHE
EPKAEKLQTFIDYASAFGIQIQGTANKISQEALQAFMAKVEGSPGAEVLNMMLLRSMQQA
RYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIREYNQITQEKVDHFAQVIPELAAS
SSQLERRAVDAERVVEAMKKAEYMADYIGDVFDGVIASVVKFGMFVELPNTIEGLVHITN
LPEYYHYNERTLSLKGERSGKVFRAGQPIRVRLVRADKETGDIDFDYLASDYDVIEKTTR
SAKAKHKHRQKAASRASRSKESKPSKPKSKQKTRKKAKKPFYQKAAKKKGRKRS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagagaacattacgaattatttaaaggagcatggccaatcaaatattcatgat
ttggcggctgcactagagatgactggtgctaagacctttcctgacctgattaaggccatc
tccaaaatggagagcaaggggcttttgtctttttcagatgagggtgaggtgtttcttaga
gcatcgcagcaaaaaaagccagagataagaatccagggtatttttcgtgccaataaggct
ggctttggctttttgtcggttgatgacagcgaggacgatatgtttattggtcgcgatgat
gtggggtacgctattgatggcgatagggttttggctgttattaaaaagccggctaatcgg
cttaaggctacagcagcagaagcgcgggtggtagctattgttgatcgttccttaaagact
gctgttggtcatattgttttagaggctaataatcctaagtatgctgggtatatcaagtca
aaaaatcaaaaaattcaacaaaggatttatatcacaaaatctccagttgccttagatggt
actgaaatcattaaggctgatattgtgcaataccctaaggctgggcaggattattttgtt
ggaagtcttcgtgatattgtcgggcaccaagatgatgttggcatggatgtgctggaggtt
ttggagtccatggatattgtgtcggcatttccagatgacgtgttagctgaggcaaatgct
atacctgatgctccgagtgatcaggatctcatggggcgtgttgatttgcgcaaagaaacg
accatcactattgatggcgctgatgctaaagacttagatgacgccatccatatcaagaag
ctagccaatggaaactttgagcttggggttcacattgcagatgtgtcctactatgttaca
gaagggtcagccttggatcgtgaggcagctgcgcgtgggacctctgtttatgtgacagat
cgtgtggtgccaatgctaccggagcgtttgtcaaatggtatttgctctctgaatccagct
gttgataggctaactcagtcagcgattatggagattgatcatcaggggcatgtggttgat
tatcagctgtgtcagtcagtgattaacacaacctttagaatgacctatagtgcggtcaat
cagatgattgcaggtgacaaggaggctctccagcaatttgcctcgattgctgacgatgtg
agtactatggttgagctgcatcagatattagaggcgatgcgcgtgaagcgtggggccttg
aactttgacacgcaggaggctaagatccttgtcaatgataagggcatgccggttgatgtg
gttttgcgtcagcgaggtgttgcagagcgcatgattgagtcctttatgctggcagcaaat
gaatgtgttgctgagcatttttcaagggctggcttgccatttatttaccgggttcatgag
gagccaaaggcagagaaattgcagacctttattgattacgctagtgcctttgggattcag
attcagggaactgctaataagatttctcaagaagccttgcaggcctttatggcaaaggta
gaaggaagtcctggagcagaggttttgaatatgatgctgctgcgctctatgcagcaggct
aggtattctgagcataatcatggtcactatggcttagcagcagactactacacgcatttt
accagcccgattcgtcgttaccctgatttactggtacaccgcatgattcgagaatacaat
cagattacgcaggagaaggtggatcattttgctcaggttattccagaattggcagcatcg
tcctctcagctagagcgtcgtgctgttgacgcggagcgtgtggttgaagcgatgaaaaaa
gcagaatacatggcagattatatcggtgatgtgtttgatggcgtgattgctagtgtagtt
aagtttggcatgtttgtcgaattaccaaatacaattgaaggtctggtgcatattaccaat
ttgcctgaatattatcactataatgaacggacactctccttaaagggtgaacgctcagga
aaggtatttagagcaggtcagccgattcgggttagattggtgagggctgacaaggaaaca
ggtgacattgattttgattacttggctagtgactatgatgtgattgaaaagaccacaagg
tcagctaaagctaagcataagcacaggcaaaaggctgcttcaagggctagcaggagcaag
gaatccaagccctcaaagccaaaatcaaagcagaagacaagaaaaaaagcaaagaaacca
ttttaccaaaaagctgctaaaaagaaaggtcgtaaaaggagttaa
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