Streptococcus equi subsp. zooepidemicus ATCC 35246: SeseC_00008
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Entry
SeseC_00008 CDS
T02355
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sezo
Streptococcus equi subsp. zooepidemicus ATCC 35246
Pathway
sezo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sezo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SeseC_00008 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sezo03400
]
SeseC_00008 (mfd)
Enzymes [BR:
sezo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SeseC_00008 (mfd)
DNA repair and recombination proteins [BR:
sezo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SeseC_00008 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
MFD_D3
UB2H
DUF3196
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEJ24240
LinkDB
All DBs
Position
5393..8887
Genome browser
AA seq
1164 aa
AA seq
DB search
MDILELFNQNKSIQTWQCDVTSLKRQLVMGLSGSSKAAAIASAYLSFQGKLVVVTSTQND
MEKLAGDLSTLLDEGSIFQFFADDTAAAEFIFSSMDKTISRIEALAFLSNPEARGILVIS
LAGLRILLPSPKTFQQGQIDLAIGVDTDLDKIVKKLIKIGYQRVAQVVNPGEFSRRGDIL
DVYEVTQDLPVRIEFFGDEIDGIRSFDVESQKSLQRKDSTSISPASDVIFEPEDFDRAIH
TLEKQLQLAKAEHKGYLEELLAVIKEGLKHKDIRKFQSLFYDNEWTILDYLPKGTPVFFD
DFQKLVDKNATFDLELAHLLTDDLQQGKSLPFLHYFADNYRELRHYKPATFFSNFHKGLG
NIKFDKMHSLTQYAMQEFFNQFPLLIDEIKRYQKSGATVLLQVESHQAYERLAKSLETYQ
CQLPLVSADAIVLRQAQIIIGHLAGGFYFADEKLVLITEHEIYHKRLKRRARRTNMSNAE
RLKDYNELSKGDYVVHSVHGIGRFLGIETINIQGVHRDYVTIQYQQSDRISLPVDQLESL
SKYVSADGKEPKINKLNDGRFQKAKQRVKKQVEDIADDLLKLYAERSQQKGFQFSPDDEL
QKAFEEDFAFVETDDQLRSIKEVKKDMESVRPMDRLLVGDVGFGKTEVAMRAAFKAIGDH
KQVAILVPTTVLAQQHYENFRERFENYPVEIAILSRFRSKKEQSESLERLKKGQVDIIIG
THRLLSKDVIFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLILTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIREMDRGGQVFYVYNKVDTIDKKVAEL
QELVPEASIGFVHGQMSDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYKPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFDMYSQLLEQAIASKQGRALTRQKGNAEINLHIDAYLP
SDYIKDERQKIDIYKRIREIDSRAAYSDLQDEIMDRFGDYPDQVAYLLEIGLLKYYLDTA
FAELVEKKEHQVMVRFEAVSLQYYLTQNYFEALSKTSLKARISEHQGKIEIIFDVRGQKD
HIILEELILFGETLGEIKSRKASS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggatattttagaattatttaatcaaaacaagtcaatccaaacctggcaatgtgatgta
acaagcttaaaacggcaattagtcatggggttgtcaggctcaagtaaagcagcagccatt
gcctcagcctatcttagctttcaagggaagctggtcgtggtgacatcaactcaaaatgac
atggaaaaattagctggtgatttgtcaaccttgcttgatgagggctctatttttcaattt
tttgcagatgatactgctgcggctgagtttattttctcctctatggataaaacaatctcg
agaatagaggcactagcttttttatcaaatccagaagcaagaggaatattggtcattagc
ttagcaggactcagaatcctacttccaagtcctaagacttttcagcagggtcagattgac
ttagcaataggagttgacactgatcttgacaagattgtcaagaagcttatcaagattggt
tatcaaagggtagctcaggttgttaatcctggtgaatttagcagacgaggcgatatttta
gatgtttacgaggtaacacaggacttgcctgttcgcatcgaattttttggtgatgagatt
gatggtattcggagctttgatgtagaaagtcaaaaatctctccaaaggaaggatagcacc
agtattagtcctgcaagtgatgtgatttttgagccggaggattttgatagggctatccat
actcttgaaaaacagcttcagcttgctaaggcagaacataaaggctatctggaggagctg
ctcgccgtaataaaagaaggcttgaagcataaggatattcgtaaatttcaatcactgttt
tatgataatgaatggacaattttagattaccttcctaagggaacaccagtattttttgat
gatttccaaaagttagttgacaaaaatgctacatttgatttagagcttgctcatttgttg
acagatgatttacaacaaggaaagtcacttccatttctccattattttgctgacaattat
cgtgagctgcgacactataagcctgccaccttcttttcaaattttcacaaggggcttggt
aatattaaatttgataaaatgcacagcttgacacagtatgccatgcaggagtttttcaat
caatttccattactcattgatgagattaagcggtatcaaaaatcaggagcaactgttctt
ttacaggttgaatctcatcaggcctatgaacggttggcaaaatcccttgagacttatcaa
tgtcaattgccccttgtttctgctgatgcaatagtattacgtcaagcacaaatcattatt
ggtcacctagcaggtgggttttactttgctgatgaaaaattagttttaattactgagcat
gagatatatcataagaggctgaagcgtcgtgctcgtcgtactaatatgagtaatgctgaa
cgcttaaaggattacaatgaattgtctaagggtgattatgtggtccacagtgtgcatggg
attggtcgttttttaggcattgaaacgattaacatacaaggggtacatcgagattatgtc
accattcagtatcagcagtcagatcgaatttctttgcctgttgatcagcttgaaagctta
tcaaaatatgtgtcagcagatggtaaagagccaaagattaataaactaaacgatggtcgt
tttcaaaaagcaaagcaaagggttaaaaagcaggttgaggatattgcagatgacctgttg
aagctttatgccgagcgtagccagcaaaaaggttttcagttttctccagatgatgagctg
caaaaagcattcgaggaagactttgccttcgttgaaaccgacgatcagcttaggtcgata
aaagaggttaaaaaagacatggagagtgtcagacctatggatcgtttactagttggtgat
gttggctttggtaagactgaggtggctatgagagctgcttttaaggctatcggtgaccat
aagcaggtagctatcttagtaccaacaaccgttttagcacagcagcattatgagaatttt
agggaaagatttgagaactatccggttgaaattgctattttaagccgctttcgcagtaaa
aaagagcaatctgaaagtctagaaaggctaaaaaagggtcaggttgatattattattggg
actcataggttgctgtcaaaggatgtgattttttcagatttaggcttgattgtcattgat
gaagagcagcgttttggtgttaagcataaagaaaccctaaaggaattaaagactaaggtt
gatgtccttatactgactgcaacgcctattcctcgtaccctgcatatgtctatgcttggt
attcgggatttatcagtgattgagacgcctcctacgaatcgctatcctgttcagacctat
gttttagaaaacaatcctggcttgattagagaagctattattcgagaaatggatcgtggt
ggtcaagtcttttatgtttacaataaggttgacacgattgacaagaaggtggcagagctg
caagaattggttccagaggcttctattggttttgtccatggtcaaatgagtgatattcag
cttgagaataccttgatggattttatcaatggtgattatgatgtcttagttgcaacaact
attattgagacaggggttgatatttctaatgtcaataccttgtttattgaaaatgctgat
catatgggactatcaaccttgtatcagcttcgaggtcgtgttggaaggagcaatcgtatt
gcctatgcctatctcatgtataagcctgataaggtattaacagaggtttccgaaaaaaga
ttggaagctattaagggctttacagagctggggtctggctttaaaattgctatgcgagat
ttatctattcggggagcaggaaatatattgggtgcttcgcaaagtggttttattgactca
gttggctttgacatgtattctcagctgctagagcaggctattgcaagtaagcaaggaaga
gcattgacgcgacaaaaaggtaatgcagagattaatctgcatattgatgcttatttacct
agtgattatatcaaagacgagcgtcaaaaaattgacatttataagcgcattcgtgagatt
gactctagagcagcttattctgatttgcaagatgaaatcatggatcgttttggtgactat
cctgatcaggtagcctatttactggagattggcttgttgaaatactacttggatacagcc
tttgctgaattagtcgagaagaaggagcatcaggttatggttaggtttgaggctgtctcg
cttcagtactatttgacacagaattattttgaagctctgtcaaaaacaagcttaaaagca
aggattagtgagcatcagggtaaaattgaaattatctttgatgttaggggtcaaaaagac
catatcattttagaagaattgatactttttggagagacacttggtgagattaaatctaga
aaagcttcctcataa
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integrated database retrieval system
