Streptococcus equi subsp. zooepidemicus ATCC 35246: SeseC_01836
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Entry
SeseC_01836 CDS
T02355
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sezo
Streptococcus equi subsp. zooepidemicus ATCC 35246
Pathway
sezo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sezo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SeseC_01836 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sezo03019
]
SeseC_01836 (rnr)
03016 Transfer RNA biogenesis [BR:
sezo03016
]
SeseC_01836 (rnr)
Enzymes [BR:
sezo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SeseC_01836 (rnr)
Messenger RNA biogenesis [BR:
sezo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SeseC_01836 (rnr)
Transfer RNA biogenesis [BR:
sezo03016
]
Prokaryotic type
tRNA degradation factors
SeseC_01836 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AEJ25713
LinkDB
All DBs
Position
complement(1524277..1526601)
Genome browser
AA seq
774 aa
AA seq
DB search
MMIENITNYLKEHGQSNIHDLAAALEMTDARSFPRLIKAISKMEGKGLLSFSDEGEVFLR
APQQKKPEIRIQGIFRANKAGFGFLSVDDSEDDMFIGRDDVGYASDGDRVLAVIKKPANR
LKATAAEARVVAIVDRSLKTAVGHIVLEADNPKYAGYIKSKNQKIQQKIYIAKSPIALDG
TEIIKADIVQYPKAGQDYFVGSLRDIVGHQDDVGIDVLEVLESMDIVSAFPDDVLAEANA
IPDAPSDQDLMGRVDLRKETTITIDGADAKDLDDAIHIKRLANGNVELGVHIADVSYYVT
EGSALDREAAARGTSVYVTDRVVPMLPERLSNGICSLNPKVDRLTQSAIMEIDQQGHVVD
YQLCQSVINTTFRMTYSAVNQMIAGDKEALQQFASIADDVSTMVELHQILEAMRVKRGAL
NFDTQEAKILVNDKGMPVDVVLRQRGVAERMIESFMLAANECVAEHFSRAGLPFIYRVHE
EPKAEKLQTFIDYASAFGIHIQGTANKISQEALQAFMAKVEGSPGAEVLNMMLLRSMQQA
RYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIREYNQITQEKVDHFAQVIPELAAS
SSQLERRAVDAERVVEAMKKAEYMTDYIGDVFDGVVASVVKFGMFVELPNTIEGLVHITN
LPEYYHYNERTLSLKGERSGKVFRAGQPIRVRLVRADKETGDIDFEYLASDYDVIEKTTK
SVKSRRQSRQRAASRVSRSKESKPSKPKSKQKTRKKAKKPFYQKAAKKKGRKRS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagagaacattacgaattatttaaaggagcatggtcaatcaaatattcatgat
ttggcagctgctctagagatgactgatgcgaggagctttcctcgactgattaaagccatt
tccaaaatggaaggcaagggacttttgtctttttcagatgagggtgaggtgtttcttaga
gcaccgcagcaaaaaaagccagagataaggattcagggtatttttcgtgccaataaggct
ggctttggctttttgtcggttgatgacagcgaggacgatatgtttattggtcgcgatgat
gtggggtatgctagtgatggcgatagggttttggctgttattaaaaagccggctaatcgg
cttaaggctacagcagcagaagcgcgggtggtagctattgttgatcgttccttaaagact
gctgttggtcatattgttttagaggctgataatcctaagtatgctgggtatatcaagtca
aaaaatcaaaaaattcaacagaagatttatatcgcaaaatctccaattgccttagatggt
actgaaatcattaaagctgatattgtgcaatatcctaaggctgggcaggattattttgtt
ggaagtcttcgtgatattgtcgggcaccaagatgatgtcggcattgatgtgctggaggtt
ttggagtctatggatattgtgtcagcatttccagatgatgtgttagccgaggcaaatgct
atacctgatgctccgagtgatcaggatcttatggggcgtgttgatttgcgcaaagaaacg
accatcactattgatggtgctgatgctaaagacctagatgacgccatccatatcaagaga
ttggccaatggaaacgttgagcttggggttcacattgcagatgtgtcctactatgtgaca
gaagggtcagccttagatcgtgaggcagcggcgcgcggaacctctgtttacgtgacagat
cgtgtggtgccgatgctgccggagcggttgtcaaatggtatctgctctctcaatccaaag
gttgaccggttgacccagtcggcgatcatggagattgatcagcaggggcatgtggttgat
tatcagctgtgtcagtcagtgattaacacaacctttagaatgacctacagcgcggtcaat
cagatgattgcaggtgacaaggaggctctccagcaatttgcctcgattgctgacgatgtg
agtactatggttgagctgcatcagatattagaggcgatgcgcgtgaagcgtggggccttg
aactttgacacgcaggaggctaagatccttgtcaatgataagggcatgccggttgatgtg
gttttgcgtcagcgaggtgttgcagagcgcatgattgagtcctttatgctggcagcaaat
gaatgtgttgctgagcatttttcaagggctggcttgccatttatttaccgggttcatgag
gagccaaaggcagagaaattgcagacctttattgattacgctagtgcctttgggattcat
attcagggaactgctaataagatttctcaagaagccttgcaggcctttatggcaaaggta
gaaggaagtcctggagcagaggttttgaatatgatgctgctgcgctctatgcagcaggct
aggtattctgagcataatcatggtcactatggcttagcagcagactactacacgcatttt
accagcccgattcgtcgttaccctgatttactggtacaccgcatgattcgagaatacaat
cagattacgcaggagaaggtggatcattttgctcaggttattccagaattggcagcatcg
tcctctcagctagagcgtcgtgctgttgacgcggagcgtgtggttgaagcgatgaaaaaa
gcagaatacatgacagattatatcggtgatgtgtttgatggcgtggttgctagtgtggtt
aagtttggcatgtttgtcgaattgccaaatacaattgaaggtctggtacatattaccaat
ttgcctgaatattatcactataatgaacggacactctccttaaagggtgaacgctcagga
aaggtatttagagcaggtcagccgattcgggttagattggtgagggctgacaaggaaaca
ggtgacattgattttgaatacttggccagtgactatgatgtgattgaaaagactactaag
tcagtcaagtctagacgacagtctcggcaacgggctgcttcaagggttagcaggagcaag
gaatccaagccctcaaagccaaaatcaaagcagaagacaagaaaaaaagcaaagaaacca
ttttaccaaaaagctgctaaaaagaaaggtcgtaaaaggagttaa
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