Streptomyces pratensis: Sfla_3574
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Entry
Sfla_3574 CDS
T01647
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfa
Streptomyces pratensis
Brite
KEGG Orthology (KO) [BR:
sfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfa03016
]
Sfla_3574
Enzymes [BR:
sfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Sfla_3574
Transfer RNA biogenesis [BR:
sfa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Sfla_3574
Prokaryotic type
tRNA splicing ligases
Sfla_3574
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADW04994
UniProt:
A0A8D4BBU0
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All DBs
Position
4130066..4131259
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AA seq
397 aa
AA seq
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MSYVEVPGAKVSIRMWADPASVEDVAMQQLRNVSTLPWIKGLAVMPDVHFGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDTTVDPG
KIHGFPTTGWDDFWSRFDGIAEAVKFRQERATKQMGTLGSGNHFIEFCLDEAGSVWLMLH
SGSRNIGKELADFHIGQAQKLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
SIMMGLFQDVVRKEFKKARVTFEPVISCHHNYVSEERYDGMDLLVTRKGAIRAGSGEFGI
IPGSMGTGSYIVKGLGNAKSFNSASHGAGRRMSRNAAKRRFSTQDLEEQTRGVECRKDSG
VVDEIPAAYKPIEQVIDQQRDLVEVVAKLKQLVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtagaggtgccgggtgcgaaggtttccatccggatgtgggcggatccggcg
tcggtcgaggacgtcgccatgcagcagctgcggaacgtgtccacactgccctggatcaag
ggcctggccgtcatgccggacgtccacttcggcaagggcgcgaccgtcggctcggtgatc
gcgatgcacggcgcggtctgtccggccgcggtgggcgtggacatcggctgcgggatgtcg
gcagtgaagacgtcgctcacggccaacgacctgccgggagatctctcacggctccggtcg
aagatcgagcaggcgatcccggtgggccgggggatgcacgacaccacggtggacccgggg
aagatccacggcttcccgaccaccggctgggacgatttctggtcgcggttcgacggcatc
gccgaggcggtcaagttccgtcaggagcgggccaccaagcagatggggacgctcgggagc
gggaaccacttcatcgagttctgcctcgacgaggcgggatcggtgtggctcatgctgcac
tccggctcccggaacatcggcaaggagctcgccgacttccacatcggccaggcccagaag
cttccgcacaaccagggactcgtcgaccgcgacctggcggtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcccaggagtacgccaagtacaaccgc
tcgatcatgatgggcctcttccaggacgtggtccgcaaggagttcaagaaggcccgggtc
acgttcgagccggtcatctcctgccaccacaactacgtgtcggaggagcgctacgacggc
atggacctgctggtcacccggaagggggcgatccgcgccggttcgggggagttcggcatc
atccccggttccatggggaccggctcctacatcgtgaagggactggggaacgcgaagtcg
ttcaactccgcctcgcacggtgcgggccggcggatgagcaggaacgcggccaagcggagg
ttctcgacgcaggacctggaggagcagacgcggggtgtggagtgccgcaaggactccggc
gtggtggacgagatcccggcggcgtacaagccgatcgagcaggtcatcgaccagcagcgt
gatctggtcgaggtcgtcgcgaagctcaagcagctcgtgtgtgtgaagggctga
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