Sphingobacterium faecium: MUK51_06490
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Entry
MUK51_06490 CDS
T08637
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfae
Sphingobacterium faecium
Brite
KEGG Orthology (KO) [BR:
sfae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfae03016
]
MUK51_06490
Enzymes [BR:
sfae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MUK51_06490
Transfer RNA biogenesis [BR:
sfae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MUK51_06490
Prokaryotic type
tRNA splicing ligases
MUK51_06490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UXD70937
LinkDB
All DBs
Position
1524128..1525519
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AA seq
463 aa
AA seq
DB search
MGSKISGKDLIKLGFPQNNSINIGLSQIQRYRKREKKETVLQEVNEVLLTPARFSGHGVW
GKLAESLIKPVDVRLHELLTHRVPFSIFGEDLIDERAKFQLYDALKLPIAVAGALMPDAH
SGYGLPIGGVLATHQSVIPYGVGVDIGCRMSLSIFDLPASFIKGKDAMLLNMLSAHTKFG
MYETHKNKIDHEVLYRSEFQDIPLLKGLQDKAYKQLGTSGGGNHFVEFGIIELAAPRPEW
KLGPGCYLAVLSHSGSRGLGAAIAKHYTYLAKKQCPLPQHVQHLAWLDLDTHDGQEYWLA
MNLAGDYAKACHENIHQRIAKALGKRIALTIENHHNFAWKETVNGQECVVHRKGATPAAQ
GTLGIIPGSMTAPGYLVEGLGNPNSLNSASHGAGRLYSRADAKSSFTKAEMNKNLAEAGV
QLLGGSMDESPMAYKDIDQVMHLQKELIQVLGIFKPKFVRMES
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtaaaatctcagggaaagaccttataaaactaggttttccacaaaataacagc
attaatatcggtttatctcagatacaacgctatagaaagcgggagaaaaaagaaacggtt
ttacaagaagtaaacgaagttttattaactcctgcacgatttagtggtcatggagtctgg
ggcaaattggcagaaagtttaatcaaaccagttgacgttcgtctgcacgaactgttgacg
catcgtgttccattttcaatttttggagaagatctcattgatgagcgggcaaaatttcaa
ttgtatgatgccctaaaattgccaatagctgtggctggagccttgatgccggacgcacat
tctggctatggcttacctataggtggcgttttggccactcatcaatccgttataccttat
ggggtgggtgttgatattggatgtcgtatgagcctgtccatatttgatctacccgcatct
tttataaaaggtaaagatgctatgttgttgaatatgttgtcagcgcataccaaatttggc
atgtatgaaacacataaaaacaaaattgaccatgaggtcttataccgatcggaatttcag
gatattccgctgctaaagggattgcaagataaagcttacaaacaattgggaacatctggt
ggtggaaatcattttgtggaatttggtatcatcgaactagctgcaccgcggcccgagtgg
aaacttggtccgggctgttatttggccgtactatcgcatagtggttcgcgtggccttgga
gcagctattgcaaagcactatacctatttggctaaaaaacaatgcccgctgccacaacat
gttcagcatctggcttggcttgatctcgatacacatgatggacaggaatattggctggct
atgaatctggcaggagattatgcaaaagcttgtcacgaaaatatccatcagcgcattgcg
aaagctttgggtaagcgtatcgcattgaccatcgaaaatcatcacaattttgcttggaag
gagactgtgaatggtcaggaatgtgtcgtgcatcgtaagggggcaacaccagctgctcaa
ggtacattgggtattattccgggctctatgactgctccgggttaccttgttgaaggttta
ggaaatccaaatagcctcaactcggcatcacatggcgccggacgtctatattcaagagct
gatgcaaaatcaagttttacaaaagcagaaatgaacaagaatctggcagaggctggagtt
caactgctggggggaagtatggatgaatcaccgatggcttacaaggacatcgatcaggtg
atgcatcttcaaaaagaattaatacaggtattgggtattttcaaacccaaatttgttcgt
atggaaagttaa
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