Sphingobacterium faecium: MUK51_13230
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Entry
MUK51_13230 CDS
T08637
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sfae
Sphingobacterium faecium
Pathway
sfae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUK51_13230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfae03019
]
MUK51_13230
Enzymes [BR:
sfae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MUK51_13230
Messenger RNA biogenesis [BR:
sfae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MUK51_13230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
KH_PARP14_8
Cas3-like_C_2
AAA_22
UvrD-helicase
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UXD68176
LinkDB
All DBs
Position
3061587..3062900
Genome browser
AA seq
437 aa
AA seq
DB search
MQFQDLKLIAPILKALEAVGYTTPTPIQEQAIPIIFRKNDLLGCAQTGTGKTAAFAIPIL
QMLSYSKVKTAKKNIRALVLTPTRELAIQIEENFNQYSKDLPLKSLVVFGGVGQQPQRDA
LKRGVDVLIATPGRLLDLYGQGYIDLKHLEFFVLDEADRMLDMGFIHDVKKLIKIIPEKR
QTLFFSATMPPEIQKLANHILVDPIKVEVTPESTTAEKIQQEVYYVKKNDKKDLLIHVLK
EKNINHVLVFSKTKHGADRIVKDLAKKNIQSAAIHGNKSQSARQNALKNFKDRTLRVLVA
TDIAARGIDIDELAFVINYDLPNIPESYVHRIGRTGRAGKDGQAISFCDEEEYAFLLDIQ
KSIRMEIPLVEKHPYALHISGIAPKKPAAAKKSGRPASAGRNGQSSSNGNTGGNRRRTSS
GPRSENRNKTTSRRRDS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatttcaagatttaaaactcatagctccaatccttaaggcattggaagctgttgga
tatactactcctaccccaattcaggaacaagcaattccaatcatttttaggaaaaatgat
ttattaggttgcgctcaaacaggaaccggaaaaactgctgcttttgctattcctatactt
caaatgttaagttattcaaaagttaaaactgcgaaaaaaaatattcgtgctttagtttta
acaccaacacgcgaactggcgattcaaattgaagaaaactttaatcaatattcaaaagat
cttccactcaaaagtcttgtagtttttggaggtgttggacaacagccacagcgcgatgcc
ctaaaaagaggtgtggacgttcttattgctacaccaggtcgcttattagacttatatggt
caaggttatatcgatttaaaacatctagagttttttgttttggatgaagctgaccgtatg
ttagatatgggatttatacatgacgtaaagaagctaattaaaataatacctgaaaaaaga
caaacattatttttctcagcaacaatgccacctgagattcaaaaattagcaaatcatatt
cttgttgatcctatcaaggtcgaagtcactccagaatctactaccgcagaaaagatccaa
caagaagtttattacgttaagaaaaacgacaaaaaagatttgttaatccatgttttaaag
gagaaaaatataaatcacgtgttagttttttctaaaactaaacatggtgcagatcgtatc
gttaaagatcttgcaaaaaagaatattcaatctgcggccattcatggaaataaatctcaa
agtgcccgtcaaaacgcccttaaaaacttcaaagaccgcaccctacgcgtattagttgct
accgatattgcagcacgtggtattgatatcgatgagctggcatttgtaatcaactatgat
ttacccaatattcctgaatcatatgtacacagaattggccgtacaggtagagctggtaaa
gatggtcaagcgatttcattctgcgacgaagaagaatatgcttttctattagatattcaa
aaatcaattcgtatggaaattcctttagtggaaaaacatccctacgcattacatatctcc
ggaatagcaccaaaaaagcctgctgcagcgaagaaatcaggaagaccagcatctgcaggc
agaaatggacaaagctctagtaatggaaatactggtggaaatagaagaagaacctcatca
ggtccaagatccgaaaatagaaataaaactacttctagaagaagagattcttaa
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