Sphingobacterium faecium: MUK51_13780
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Entry
MUK51_13780 CDS
T08637
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sfae
Sphingobacterium faecium
Pathway
sfae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUK51_13780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfae03019
]
MUK51_13780
03009 Ribosome biogenesis [BR:
sfae03009
]
MUK51_13780
Enzymes [BR:
sfae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MUK51_13780
Messenger RNA biogenesis [BR:
sfae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MUK51_13780
Ribosome biogenesis [BR:
sfae03009
]
Prokaryotic type
rRNA helicases
MUK51_13780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UXD68275
LinkDB
All DBs
Position
3198874..3200745
Genome browser
AA seq
623 aa
AA seq
DB search
MNPFLELGIREEIVNAISELGFEKPSEIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP
LLQQLDFSQKHPQALVLCPTRELCLQISKDIERYAKNLDNVHVVAVYGGANISDQLRQIR
RGVQIVVATPGRMLDIIGRNAIDFSQVKYVVLDEADEMLNMGFKEDINNILSETPDTKKT
WLFSATMPSEVRRIAKNYMTDPVEMTVGTKNTGNANIEHQYYLIRAKDKYAAFKRIVDSN
PDIFGIVFCRTKIETQEIAESLIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATD
VAARGIDVNDVTHVINFSLPDEIENYTHRSGRTARAGKTGISISLINIKEQSKIRQLEKV
IGKQFERKQVPQGADVVEKQLLTIINKVQNVEVNEDQINQFLPAIMEGFESLSKEDIVKR
FASLEFNRFLDYYKGAHDLNIEARDISSNGRERGERGERGERGERGSSKGFTRLFMNLGS
VDEFSRGDMLGFICNNAKISGKSIGKIDLKGVFTFFEVEDAEVAKVFEGFKEVDFNGRNV
RIEVSGDGKTENRGGGNRSRGGSGERRSFGGGERREGGYRGGDRRSGGGERREGGYRGGD
RREGNGGGFRDFSGKRKESSNKY
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatttttagaactgggaatccgtgaggaaattgttaatgccatctcagaatta
ggttttgaaaaaccttctgaaattcaggaaaaagccattcctgttttattgactggtaac
gacgattttgtcggattagcccaaaccggcacaggtaagacagcagcatttggtcttcca
ttattacagcaattagacttttctcagaaacatcctcaagcgttggtattatgcccgaca
cgtgagctttgtttgcaaatctcgaaagatatagaaagatatgctaaaaacctagacaac
gtccatgttgttgcggtttatggaggtgcaaatattagtgaccaactacgtcagatcaga
cgtggagtgcaaattgtagtagcgacccctggtcgtatgttagatatcattggccgtaat
gctattgatttctctcaagtaaaatatgttgtgttagatgaagcggatgagatgcttaat
atgggcttcaaagaagacatcaacaacattttgtcagagactcctgacactaaaaaaaca
tggttattctcagctactatgccttcagaggttcgtcgtattgctaaaaactatatgact
gatcctgtagagatgactgtaggaacaaaaaacacaggtaatgcaaacattgagcatcaa
tattatttgattagagctaaagataaatatgctgctttcaaacgtattgttgattcaaac
cctgatatttttggtatcgtattttgtcgtacaaaaattgaaactcaagaaattgcagaa
tctttaattaaagatggttacaatgcggattcactacacggagatttatctcaacaacaa
cgtgataaagtgatgaaacgttaccgtgaccgtagtttacaactactaatcgctaccgat
gtagcggcgcgtggtattgatgtaaacgacgtaactcacgtaattaacttctctttacct
gatgaaattgaaaactatactcaccgttcgggccgtacagctcgtgctggtaaaactggt
atttcaatctctttaatcaacattaaagaacaaagcaaaatccgtcaacttgaaaaagtt
atcggaaagcaatttgaacgtaaacaagttcctcaaggagctgatgttgttgaaaagcaa
ttattgacaatcatcaataaagttcagaatgtagaagttaatgaggatcaaatcaatcaa
ttcttaccagctattatggaaggttttgagtcgttatcgaaagaagatatcgtaaaaaga
tttgcttcattagagttcaatagattcttagattattacaaaggtgcacacgatttaaat
atcgaagcacgtgatatcagcagcaacggccgcgaacgtggcgaaagaggtgaacgtggt
gaaagaggcgagcgtggtagttcaaaaggatttactcgtttgtttatgaacttaggttct
gtagatgaattcagccgtggagacatgttaggatttatctgtaacaacgctaaaatctct
ggtaaatcaattggtaaaattgatctaaaaggagttttcacattctttgaagttgaagat
gctgaagttgctaaggtatttgaaggattcaaagaagttgatttcaacggacgtaatgtt
cgcatcgaagtttctggagatggaaaaactgaaaaccgtggtggtggaaacagaagccgt
ggtggaagtggtgagcgcagaagctttggcggcggtgaaagacgtgaaggtggataccgt
ggtggagatcgcagaagtggtggcggtgaaagacgtgaaggtggataccgtggtggagat
cgcagagaaggaaacggtggtggttttagagacttttctggaaaaagaaaagaatctagt
aacaaatactaa
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